LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
BDNF-AS
hsa-miR-375
0.823
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499568
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
1354-1374
0.017
1
7mer
1093-1116
0.013
8
6mer
692-719
0.003
0
6mer
911-932
0.002
1
XLOC_013553
hsa-miR-375
0.823
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028205
Biotype: transcript isomorph
Gene id: XLOC_013553
Gene Name: XLOC_013553
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5935-5956
0.004
Not Conserved
6mer
2514-2535
0.004
1
6mer
4148-4167
0.003
1
6mer
4561-4582
0.003
0
6mer
5443-5464
0.003
1
6mer
6033-6054
0.003
0
7mer
5542-5561
0.002
Not Conserved
7mer
4952-4973
0.002
Not Conserved
6mer
5247-5268
0.002
0
6mer
3585-3605
0.002
Not Conserved
6mer
5737-5758
0.001
Not Conserved
6mer
5345-5366
0.001
0
6mer
5835-5856
0.001
Not Conserved
6mer
2514-2540
0.001
0
6mer
5638-5659
0.001
Not Conserved
6mer
5491-5513
0.001
Not Conserved
6mer
4659-4680
0.001
Not Conserved
SLC8A1-AS1
hsa-miR-375
0.822
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000598247
Biotype: antisense
Gene id: ENSG00000227028
Gene Name: SLC8A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
409-432
0.008
8
6mer
331-356
0.005
0
6mer
336-361
0.005
2
6mer
364-374
0.005
1
6mer
423-437
0.005
4
6mer
354-366
0.004
1
6mer
411-420
0.004
3
RP11-964E11.2
hsa-miR-375
0.822
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555107
Biotype: antisense
Gene id: ENSG00000258661
Gene Name: RP11-964E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2254-2272
0.033
9
6mer
1951-1972
0.003
0
CTD-3193O13.14
hsa-miR-375
0.822
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595107
Biotype: antisense
Gene id: ENSG00000269813
Gene Name: CTD-3193O13.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
91-112
0.013
9
6mer
175-179
0.012
9
6mer
114-128
0.011
10
RP11-707A18.1
hsa-miR-375
0.822
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509932
Biotype: lincRNA
Gene id: ENSG00000250125
Gene Name: RP11-707A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3373-3388
0.013
3
7mer
3186-3195
0.006
1
6mer
117-140
0.006
1
6mer
486-504
0.005
1
6mer
3315-3331
0.002
1
6mer
1164-1190
0.002
0
6mer
1896-1916
0.001
0
RP11-775G23.1
hsa-miR-375
0.822
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579862
Biotype: lincRNA
Gene id: ENSG00000265217
Gene Name: RP11-775G23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-172
0.021
0
7mer
673-697
0.015
1
AC008079.10
hsa-miR-375
0.822
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6611-6637
0.007
4
6mer
323-339
0.005
1
6mer
19669-19678
0.004
0
6mer
2055-2077
0.002
1
6mer
16635-16661
0.002
Not Conserved
6mer
1407-1426
0.002
1
6mer
3724-3745
0.002
3
6mer
12808-12821
0.002
0
6mer
17447-17461
0.002
0
6mer
4469-4489
0.002
3
6mer
12506-12533
0.002
1
6mer
7115-7136
0.001
1
6mer
10110-10120
0.001
0
6mer
16528-16549
0.001
1
6mer
3690-3713
0.001
3
6mer
12490-12494
0.001
Not Conserved
RP11-110L15.1
hsa-miR-375
0.822
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549163
Biotype: lincRNA
Gene id: ENSG00000257781
Gene Name: RP11-110L15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-118
0.018
2
7mer
33-58
0.018
0
XLOC_003971
hsa-miR-375
0.821
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007371
Biotype: transcript isomorph
Gene id: XLOC_003971
Gene Name: XLOC_003971
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3372-3387
0.013
3
7mer
3185-3194
0.006
1
6mer
116-139
0.006
1
6mer
485-503
0.005
1
6mer
3314-3330
0.002
1
6mer
1163-1189
0.002
0
6mer
1895-1915
0.001
0
RP11-61A14.3
hsa-miR-375
0.821
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561811
Biotype: lincRNA
Gene id: ENSG00000261088
Gene Name: RP11-61A14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
545-553
0.016
1
6mer
231-258
0.006
1
6mer
267-271
0.005
1
6mer
543-558
0.005
1
6mer
254-264
0.004
0
RP11-629E24.2
hsa-miR-375
0.821
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000585222
Biotype: lincRNA
Gene id: ENSG00000266505
Gene Name: RP11-629E24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-112
0.027
3
6mer
79-100
0.009
3
AC009531.2
hsa-miR-375
0.821
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000442323
Biotype: lincRNA
Gene id: ENSG00000226063
Gene Name: AC009531.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
540-564
0.036
6
AC023128.1
hsa-miR-375
0.821
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432431
Biotype: lincRNA
Gene id: ENSG00000234940
Gene Name: AC023128.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
451-477
0.036
7
RP11-244G12.1
hsa-miR-375
0.821
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000614959
Biotype: lincRNA
Gene id: ENSG00000277797
Gene Name: RP11-244G12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2388-2401
0.021
1
6mer
323-327
0.007
4
6mer
57-64
0.004
Not Conserved
6mer
1862-1874
0.003
0
XLOC_006786
hsa-miR-375
0.820
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014687
Biotype: transcript isomorph
Gene id: XLOC_006786
Gene Name: XLOC_006786
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
110-130
0.018
0
6mer
128-149
0.018
0
RP11-626G11.1
hsa-miR-375
0.819
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565802
Biotype: lincRNA
Gene id: ENSG00000261357
Gene Name: RP11-626G11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
297-323
0.022
1
6mer
308-329
0.005
1
6mer
332-336
0.004
0
6mer
337-341
0.004
0
RP11-282O18.3
hsa-miR-375
0.819
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542427
Biotype: antisense
Gene id: ENSG00000235423
Gene Name: RP11-282O18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
473-492
0.025
1
7mer
326-347
0.010
1
CTA-292E10.9
hsa-miR-375
0.818
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4540-4560
0.013
6
7mer
10662-10688
0.008
6
6mer
3704-3722
0.003
6
6mer
14923-14948
0.003
4
6mer
21458-21462
0.002
1
6mer
19795-19818
0.002
0
6mer
20460-20487
0.002
0
6mer
21632-21648
0.002
1
AC000403.4
hsa-miR-375
0.818
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613696
Biotype: lincRNA
Gene id: ENSG00000278727
Gene Name: AC000403.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3473-3484
0.024
1
7mer
903-921
0.012
4
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