LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
CTD-2561B21.11
hsa-miR-375
0.827
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575647
Biotype: lincRNA
Gene id: ENSG00000262873
Gene Name: CTD-2561B21.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-155
0.036
1
ERVK3-1
hsa-miR-375
0.827
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000427361
Biotype: lincRNA
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
747-767
0.025
1
6mer
532-550
0.007
1
6mer
287-314
0.003
0
RP11-436I24.1
hsa-miR-375
0.827
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000450575
Biotype: antisense
Gene id: ENSG00000235740
Gene Name: RP11-436I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
666-680
0.016
5
7mer
558-572
0.006
1
6mer
1452-1476
0.006
1
6mer
334-356
0.005
0
6mer
682-704
0.004
1
RP11-362F19.1
hsa-miR-375
0.827
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511213
Biotype: lincRNA
Gene id: ENSG00000248810
Gene Name: RP11-362F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
549-571
0.017
0
7mer
418-440
0.010
0
7mer
131-145
0.009
0
RP11-584P21.2
hsa-miR-375
0.826
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502400
Biotype: lincRNA
Gene id: ENSG00000250075
Gene Name: RP11-584P21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
675-700
0.015
0
6mer
395-419
0.009
1
6mer
1194-1214
0.007
1
6mer
815-832
0.005
1
LOC646903
hsa-miR-375
0.826
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_036538.1
Biotype: antisense
Gene id: NR_036538.1 (gene)
Gene Name: LOC646903
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
574-593
0.034
3
6mer
576-598
0.002
1
XLOC_004501
hsa-miR-375
0.826
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009477
Biotype: transcript isomorph
Gene id: XLOC_004501
Gene Name: XLOC_004501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
644-665
0.012
4
7mer
504-526
0.011
0
6mer
62-77
0.008
3
6mer
2086-2104
0.004
1
MGC27382
hsa-miR-375
0.826
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413519
Biotype: sense_overlapping
Gene id: ENSG00000237413
Gene Name: MGC27382
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-60
0.031
3
6mer
522-540
0.005
1
EMX2OS
hsa-miR-375
0.826
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000551288
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3286-3312
0.008
0
6mer
6762-6788
0.007
8
6mer
6984-7006
0.005
4
6mer
6352-6371
0.005
5
6mer
5854-5877
0.003
2
6mer
5542-5560
0.003
2
6mer
4212-4237
0.002
1
6mer
2943-2967
0.002
0
6mer
4206-4216
0.001
1
RP1-309I22.2
hsa-miR-375
0.826
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15622-15646
0.006
3
6mer
351-370
0.005
4
6mer
28337-28352
0.003
0
6mer
22980-22987
0.003
6
6mer
25696-25722
0.002
1
6mer
1552-1575
0.002
2
6mer
1909-1934
0.002
1
6mer
25936-25956
0.002
2
6mer
20992-21015
0.002
1
6mer
18119-18138
0.002
3
6mer
7776-7792
0.002
1
6mer
16896-16922
0.001
1
6mer
14520-14543
0.001
3
6mer
4941-4958
0.001
0
6mer
21006-21021
0.001
0
6mer
1987-2006
0.001
1
SLC8A1-AS1
hsa-miR-375
0.825
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610721
Biotype: antisense
Gene id: ENSG00000227028
Gene Name: SLC8A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
452-475
0.007
8
6mer
374-399
0.005
0
6mer
379-404
0.004
2
6mer
407-417
0.004
1
6mer
397-409
0.004
1
6mer
466-480
0.004
4
6mer
673-691
0.004
1
6mer
454-463
0.003
3
DIRC3-AS1
hsa-miR-375
0.825
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452813
Biotype: lincRNA
Gene id: ENSG00000233143
Gene Name: DIRC3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
391-414
0.030
1
7mer
135-160
0.006
0
BDNF-AS
hsa-miR-375
0.825
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033312.1
Biotype: antisense
Gene id: NR_033312.1 (gene)
Gene Name: BDNF-AS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
1354-1374
0.017
1
7mer
1093-1116
0.013
8
6mer
692-719
0.003
0
6mer
911-932
0.002
1
RP11-798K23.4
hsa-miR-375
0.825
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000520758
Biotype: lincRNA
Gene id: ENSG00000253652
Gene Name: RP11-798K23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
264-280
0.036
2
RP11-473M20.9
hsa-miR-375
0.825
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000577123
Biotype: lincRNA
Gene id: ENSG00000262370
Gene Name: RP11-473M20.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
917-942
0.017
0
6mer
888-911
0.016
0
6mer
378-403
0.004
Not Conserved
LINC00310
hsa-miR-375
0.824
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_027266.1
Biotype: lincRNA
Gene id: NR_027266.1 (gene)
Gene Name: LINC00310
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-107
0.021
4
7mer
576-600
0.015
1
RP5-1148A21.3
hsa-miR-375
0.824
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000584934
Biotype: antisense
Gene id: ENSG00000266680
Gene Name: RP5-1148A21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-147
0.026
3
6mer
163-189
0.006
1
6mer
157-167
0.004
0
RP11-814H16.2
hsa-miR-375
0.824
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608029
Biotype: lincRNA
Gene id: ENSG00000272862
Gene Name: RP11-814H16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
460-483
0.019
1
7mer
77-90
0.017
1
XLOC_011715
hsa-miR-375
0.823
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024390
Biotype: transcript isomorph
Gene id: XLOC_011715
Gene Name: XLOC_011715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
796-823
0.010
0
7mer
1489-1505
0.007
2
7mer
1826-1851
0.005
1
6mer
468-494
0.005
0
6mer
1032-1053
0.004
2
6mer
497-501
0.003
0
6mer
2762-2788
0.002
1
RP11-420M1.2
hsa-miR-375
0.823
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561155
Biotype: antisense
Gene id: ENSG00000259180
Gene Name: RP11-420M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-62
0.030
3
6mer
318-322
0.006
0
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