LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP11-91H12.3
hsa-miR-375
0.833
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502354
Biotype: antisense
Gene id: ENSG00000250801
Gene Name: RP11-91H12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
474-494
0.034
1
6mer
287-313
0.003
0
RP11-392O1.4
hsa-miR-375
0.833
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588996
Biotype: antisense
Gene id: ENSG00000267747
Gene Name: RP11-392O1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-36
0.018
4
7mer
444-465
0.010
0
6mer
129-154
0.006
1
6mer
452-475
0.003
2
XLOC_012747
hsa-miR-375
0.833
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026396
Biotype: transcript isomorph
Gene id: XLOC_012747
Gene Name: XLOC_012747
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-166
0.032
1
6mer
134-158
0.005
1
FAM74A6
hsa-miR-375
0.832
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612305
Biotype: lincRNA
Gene id: ENSG00000274516
Gene Name: FAM74A6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1289-1306
0.017
0
7mer
694-719
0.011
0
6mer
1080-1098
0.005
0
6mer
1465-1485
0.004
Not Conserved
RP11-638L3.1
hsa-miR-375
0.832
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583687
Biotype: lincRNA
Gene id: ENSG00000265533
Gene Name: RP11-638L3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
966-980
0.013
1
7mer
1385-1403
0.010
1
7mer
584-599
0.009
0
6mer
2161-2183
0.004
2
RP11-295G20.2
hsa-miR-375
0.831
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000454631
Biotype: antisense
Gene id: ENSG00000233461
Gene Name: RP11-295G20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
316-342
0.037
0
XLOC_009983
hsa-miR-375
0.831
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020678
Biotype: transcript isomorph
Gene id: XLOC_009983
Gene Name: XLOC_009983
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-46
0.022
1
6mer
1014-1041
0.015
9
LINC00910
hsa-miR-375
0.830
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586231
Biotype: lincRNA
Gene id: ENSG00000188825
Gene Name: LINC00910
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
194-216
0.035
Not Conserved
6mer
1471-1491
0.002
Not Conserved
CTD-2501M5.1
hsa-miR-375
0.830
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519005
Biotype: lincRNA
Gene id: ENSG00000253507
Gene Name: CTD-2501M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
632-656
0.023
0
7mer
532-552
0.014
1
RP11-18H7.1
hsa-miR-375
0.830
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469070
Biotype: lincRNA
Gene id: ENSG00000242622
Gene Name: RP11-18H7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-316
0.021
6
7mer
723-734
0.015
1
LOC100507634
hsa-miR-375
0.829
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038320.1
Biotype: lincRNA
Gene id: NR_038320.1 (gene)
Gene Name: LOC100507634
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1894-1914
0.017
2
6mer
1754-1758
0.008
5
6mer
1953-1976
0.006
0
6mer
1768-1782
0.006
3
XLOC_005774
hsa-miR-375
0.829
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012216
Biotype: transcript isomorph
Gene id: XLOC_005774
Gene Name: XLOC_005774
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
834-846
0.013
2
7mer
362-377
0.011
2
6mer
111-128
0.005
1
6mer
658-671
0.003
1
6mer
823-836
0.003
3
6mer
804-825
0.002
0
XLOC_000206
hsa-miR-375
0.829
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000205
Biotype: transcript isomorph
Gene id: XLOC_000206
Gene Name: XLOC_000206
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1644-1664
0.017
2
6mer
1504-1508
0.007
5
6mer
1703-1726
0.006
0
6mer
1518-1532
0.006
3
XLOC_011918
hsa-miR-375
0.829
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024630
Biotype: transcript isomorph
Gene id: XLOC_011918
Gene Name: XLOC_011918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3124-3144
0.020
0
7mer
2981-2989
0.012
0
6mer
2150-2174
0.004
0
6mer
3089-3111
0.001
Not Conserved
XLOC_000630
hsa-miR-375
0.829
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002266
Biotype: transcript isomorph
Gene id: XLOC_000630
Gene Name: XLOC_000630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-290
0.028
1
6mer
342-354
0.009
1
GJA9-MYCBP
hsa-miR-375
0.828
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037633.1
Biotype: sense
Gene id: NR_037633.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1689-1703
0.009
3
8mer
3475-3497
0.008
1
6mer
4196-4216
0.005
8
6mer
4809-4834
0.005
7
7mer
1964-1972
0.004
0
6mer
831-846
0.003
0
6mer
3927-3949
0.002
1
6mer
3784-3810
0.001
1
ADAMTS9-AS1
hsa-miR-375
0.828
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594810
Biotype: antisense
Gene id: ENSG00000241158
Gene Name: ADAMTS9-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3388-3405
0.021
5
6mer
3394-3412
0.007
5
6mer
732-756
0.003
3
7mer
1833-1853
0.003
1
6mer
1390-1414
0.002
2
XLOC_006364
hsa-miR-375
0.828
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013714
Biotype: transcript isomorph
Gene id: XLOC_006364
Gene Name: XLOC_006364
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1836-1852
0.021
3
6mer
1842-1861
0.006
1
6mer
1578-1593
0.005
3
6mer
1472-1499
0.004
1
XLOC_005737
hsa-miR-375
0.828
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011496
Biotype: transcript isomorph
Gene id: XLOC_005737
Gene Name: XLOC_005737
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1005-1022
0.027
10
6mer
942-966
0.002
2
7mer
2138-2155
0.002
1
6mer
3672-3696
0.001
Not Conserved
6mer
2213-2217
0.001
1
6mer
2436-2449
0.001
1
6mer
3652-3669
0.001
1
6mer
2254-2274
0.001
0
LINC00353
hsa-miR-375
0.828
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000435401
Biotype: lincRNA
Gene id: ENSG00000236176
Gene Name: LINC00353
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-59
0.030
3
6mer
464-484
0.006
3
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