LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
CTB-152G17.6
hsa-miR-375
0.840
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000607968
Biotype: antisense
Gene id: ENSG00000272918
Gene Name: CTB-152G17.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-50
0.019
5
7mer
2387-2397
0.014
1
6mer
486-505
0.005
2
ZRANB2-AS2
hsa-miR-375
0.840
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623721
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
368-384
0.031
0
6mer
960-979
0.006
4
RP11-680F20.10
hsa-miR-375
0.839
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000569238
Biotype: lincRNA
Gene id: ENSG00000260209
Gene Name: RP11-680F20.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
496-515
0.038
0
RP11-24P14.1
hsa-miR-375
0.839
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446693
Biotype: lincRNA
Gene id: ENSG00000233047
Gene Name: RP11-24P14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-57
0.029
0
6mer
365-377
0.005
1
6mer
400-419
0.004
0
XLOC_007865
hsa-miR-375
0.839
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016487
Biotype: transcript isomorph
Gene id: XLOC_007865
Gene Name: XLOC_007865
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-113
0.026
1
7mer
20-39
0.012
0
RP11-303E16.8
hsa-miR-375
0.839
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564536
Biotype: processed_transcript
Gene id: ENSG00000260643
Gene Name: RP11-303E16.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
728-755
0.025
7
6mer
608-634
0.009
10
6mer
127-148
0.004
3
CXorf24
hsa-miR-375
0.839
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000624822
Biotype: lincRNA
Gene id: ENSG00000196741
Gene Name: CXorf24
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-311
0.038
1
RP13-786C16.1
hsa-miR-375
0.839
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000610375
Biotype: antisense
Gene id: ENSG00000184566
Gene Name: RP13-786C16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1143-1157
0.030
1
6mer
632-657
0.004
1
6mer
48-61
0.004
0
RP11-732A21.2
hsa-miR-375
0.838
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000566440
Biotype: lincRNA
Gene id: ENSG00000260008
Gene Name: RP11-732A21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-159
0.031
7
7mer
1006-1031
0.007
1
RP11-550I24.2
hsa-miR-375
0.838
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475102
Biotype: antisense
Gene id: ENSG00000243176
Gene Name: RP11-550I24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-323
0.022
5
7mer
175-199
0.015
4
CXorf24
hsa-miR-375
0.838
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000357412
Biotype: lincRNA
Gene id: ENSG00000196741
Gene Name: CXorf24
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-311
0.038
1
XLOC_010670
hsa-miR-375
0.838
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022065
Biotype: transcript isomorph
Gene id: XLOC_010670
Gene Name: XLOC_010670
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
468-493
0.011
10
7mer
1411-1429
0.009
0
6mer
104-127
0.006
1
6mer
1604-1624
0.006
0
6mer
270-293
0.003
1
6mer
1574-1595
0.003
0
KIAA0087
hsa-miR-375
0.837
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_022006.1
Biotype: sense
Gene id: NR_022006.1 (gene)
Gene Name: KIAA0087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
375-398
0.011
10
7mer
1835-1861
0.006
0
6mer
4137-4152
0.005
4
6mer
610-635
0.004
4
6mer
637-650
0.004
1
6mer
2420-2434
0.003
3
6mer
914-931
0.003
3
6mer
3304-3323
0.002
0
XLOC_007849
hsa-miR-375
0.837
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016477
Biotype: transcript isomorph
Gene id: XLOC_007849
Gene Name: XLOC_007849
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-25
0.037
6
AF131217.1
hsa-miR-375
0.837
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000430247
Biotype: lincRNA
Gene id: ENSG00000232855
Gene Name: AF131217.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-122
0.026
2
7mer
148-170
0.008
1
6mer
393-415
0.003
1
RP11-96B5.4
hsa-miR-375
0.836
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000561565
Biotype: lincRNA
Gene id: ENSG00000261368
Gene Name: RP11-96B5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-182
0.020
0
7mer
291-315
0.012
0
6mer
485-489
0.005
0
RP11-4O3.2
hsa-miR-375
0.836
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508135
Biotype: lincRNA
Gene id: ENSG00000249831
Gene Name: RP11-4O3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
367-386
0.018
3
7mer
733-755
0.013
1
6mer
174-198
0.006
1
XLOC_009728
hsa-miR-375
0.834
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021113
Biotype: transcript isomorph
Gene id: XLOC_009728
Gene Name: XLOC_009728
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-211
0.033
5
6mer
590-608
0.004
2
RP5-1024N4.2
hsa-miR-375
0.833
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431986
Biotype: lincRNA
Gene id: ENSG00000223720
Gene Name: RP5-1024N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-259
0.037
1
CTD-2561B21.11
hsa-miR-375
0.833
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572036
Biotype: lincRNA
Gene id: ENSG00000262873
Gene Name: CTD-2561B21.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-155
0.037
1
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