LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
XLOC_009043
hsa-miR-375
0.845
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019211
Biotype: transcript isomorph
Gene id: XLOC_009043
Gene Name: XLOC_009043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
598-619
0.023
0
6mer
206-221
0.016
0
CTC-459F4.3
hsa-miR-375
0.844
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591549
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-351
0.023
1
7mer
365-384
0.015
0
RP11-475A13.1
hsa-miR-375
0.844
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558875
Biotype: lincRNA
Gene id: ENSG00000259737
Gene Name: RP11-475A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
545-570
0.038
1
RP11-214C8.2
hsa-miR-375
0.844
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580942
Biotype: lincRNA
Gene id: ENSG00000264954
Gene Name: RP11-214C8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
445-453
0.023
0
6mer
2457-2471
0.006
3
6mer
453-477
0.004
1
6mer
621-638
0.004
1
6mer
1179-1202
0.001
Not Conserved
6mer
1156-1181
0.001
1
RP11-85O21.2
hsa-miR-375
0.844
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000453529
Biotype: antisense
Gene id: ENSG00000236668
Gene Name: RP11-85O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
21-40
0.013
7
6mer
31-51
0.010
6
7mer
1160-1187
0.009
6
6mer
596-611
0.006
7
RP11-542F9.1
hsa-miR-375
0.843
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000449928
Biotype: lincRNA
Gene id: ENSG00000223504
Gene Name: RP11-542F9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-136
0.038
8
XLOC_009836
hsa-miR-375
0.843
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020518
Biotype: transcript isomorph
Gene id: XLOC_009836
Gene Name: XLOC_009836
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
338-362
0.029
7
6mer
772-791
0.004
1
6mer
468-486
0.003
3
6mer
643-655
0.003
Not Conserved
LINC00310
hsa-miR-375
0.843
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000430922
Biotype: lincRNA
Gene id: ENSG00000227456
Gene Name: LINC00310
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-36
0.023
4
7mer
505-529
0.016
1
XLOC_007192
hsa-miR-375
0.843
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015149
Biotype: transcript isomorph
Gene id: XLOC_007192
Gene Name: XLOC_007192
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
562-572
0.019
1
7mer
759-781
0.019
3
RP11-439L18.3
hsa-miR-375
0.843
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038987.1
Biotype: lincRNA
Gene id: NR_038987.1 (gene)
Gene Name: RP11-439L18.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-255
0.015
1
6mer
1774-1797
0.006
1
6mer
1795-1813
0.006
0
6mer
1806-1832
0.005
0
6mer
1767-1787
0.005
Not Conserved
ZRANB2-AS2
hsa-miR-375
0.843
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000625045
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-335
0.038
0
XLOC_006045
hsa-miR-375
0.842
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013412
Biotype: transcript isomorph
Gene id: XLOC_006045
Gene Name: XLOC_006045
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1138-1150
0.012
1
7mer
1622-1634
0.010
0
6mer
705-730
0.005
2
6mer
853-874
0.003
2
6mer
716-735
0.003
2
6mer
716-740
0.003
2
RP11-428J1.4
hsa-miR-375
0.842
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606227
Biotype: lincRNA
Gene id: ENSG00000271978
Gene Name: RP11-428J1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-234
0.029
3
6mer
806-830
0.004
1
6mer
726-740
0.004
2
BAALC-AS1
hsa-miR-375
0.841
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521102
Biotype: antisense
Gene id: ENSG00000247081
Gene Name: BAALC-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
517-530
0.020
2
7mer
463-477
0.012
1
7mer
301-326
0.006
Not Conserved
LINC01183
hsa-miR-375
0.841
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514853
Biotype: lincRNA
Gene id: ENSG00000230561
Gene Name: LINC01183
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
282-300
0.030
5
6mer
138-163
0.005
1
6mer
303-320
0.003
1
CTD-2639E6.4
hsa-miR-375
0.841
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000569130
Biotype: sense_overlapping
Gene id: ENSG00000260366
Gene Name: CTD-2639E6.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-170
0.021
0
6mer
160-180
0.008
0
6mer
149-175
0.006
0
6mer
229-255
0.002
Not Conserved
RP11-932A10.1
hsa-miR-375
0.841
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556602
Biotype: lincRNA
Gene id: ENSG00000259008
Gene Name: RP11-932A10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3489-3513
0.017
1
6mer
3759-3784
0.005
0
6mer
2582-2602
0.004
4
6mer
2897-2911
0.004
5
6mer
597-623
0.003
1
6mer
3117-3135
0.003
2
6mer
1204-1228
0.002
0
RP11-525K10.2
hsa-miR-375
0.841
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566030
Biotype: lincRNA
Gene id: ENSG00000261376
Gene Name: RP11-525K10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
465-490
0.027
2
6mer
378-399
0.006
1
6mer
194-211
0.005
1
SLC7A11-AS1
hsa-miR-375
0.840
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510767
Biotype: antisense
Gene id: ENSG00000250033
Gene Name: SLC7A11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4525-4545
0.007
3
7mer
2431-2453
0.006
2
7mer
3072-3098
0.005
2
6mer
3781-3798
0.004
3
6mer
2668-2694
0.003
5
6mer
1354-1379
0.003
0
6mer
2129-2153
0.002
2
6mer
846-868
0.002
1
6mer
2912-2938
0.002
Not Conserved
6mer
2487-2510
0.001
2
7mer
3103-3124
0.001
0
6mer
1367-1387
0.001
Not Conserved
RP11-546B15.1
hsa-miR-375
0.840
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563846
Biotype: antisense
Gene id: ENSG00000261002
Gene Name: RP11-546B15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
796-820
0.020
2
7mer
31-53
0.018
1
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