LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
CTA-929C8.9
hsa-miR-375
0.854
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18613-18629
0.008
1
7mer
8553-8571
0.004
0
6mer
23925-23948
0.003
0
6mer
1311-1318
0.002
0
6mer
23552-23563
0.002
2
6mer
2756-2776
0.002
0
6mer
8855-8872
0.002
0
6mer
12289-12312
0.002
1
6mer
2995-3021
0.002
1
6mer
24068-24092
0.002
1
6mer
10944-10970
0.002
1
6mer
22926-22942
0.002
1
6mer
4479-4491
0.002
1
7mer
20145-20168
0.002
0
6mer
20778-20798
0.001
0
6mer
20054-20071
0.001
0
6mer
1864-1878
0.001
Not Conserved
LINC00680
hsa-miR-375
0.854
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418368
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1490-1512
0.040
2
RP11-1109M24.5
hsa-miR-375
0.854
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577956
Biotype: lincRNA
Gene id: ENSG00000264956
Gene Name: RP11-1109M24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2407-2432
0.029
0
6mer
576-592
0.007
0
6mer
578-604
0.004
0
RP11-424G14.1
hsa-miR-375
0.854
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000566193
Biotype: lincRNA
Gene id: ENSG00000260197
Gene Name: RP11-424G14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2500-2518
0.022
0
7mer
2443-2463
0.018
0
AP000959.2
hsa-miR-375
0.853
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441759
Biotype: lincRNA
Gene id: ENSG00000234034
Gene Name: AP000959.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
942-963
0.028
1
6mer
264-284
0.007
1
6mer
51-72
0.005
0
BAALC-AS1
hsa-miR-375
0.853
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500902
Biotype: antisense
Gene id: ENSG00000247081
Gene Name: BAALC-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
784-797
0.019
2
7mer
730-744
0.010
1
6mer
164-189
0.005
1
7mer
568-593
0.005
Not Conserved
RP11-332H14.2
hsa-miR-375
0.853
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610036
Biotype: lincRNA
Gene id: ENSG00000272994
Gene Name: RP11-332H14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-46
0.027
3
7mer
208-234
0.013
3
RP11-196O2.1
hsa-miR-375
0.853
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000570271
Biotype: sense_overlapping
Gene id: ENSG00000261184
Gene Name: RP11-196O2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1041-1053
0.012
1
7mer
1525-1537
0.010
0
6mer
608-633
0.006
2
6mer
756-777
0.004
2
6mer
619-643
0.004
2
6mer
619-638
0.004
2
XLOC_012549
hsa-miR-375
0.852
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025728
Biotype: transcript isomorph
Gene id: XLOC_012549
Gene Name: XLOC_012549
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
368-376
0.025
0
6mer
544-561
0.005
1
6mer
376-400
0.004
1
6mer
1079-1104
0.004
1
6mer
1102-1125
0.002
Not Conserved
XLOC_000191
hsa-miR-375
0.852
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000939
Biotype: transcript isomorph
Gene id: XLOC_000191
Gene Name: XLOC_000191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1069-1080
0.015
0
6mer
1769-1784
0.014
1
6mer
1248-1259
0.006
0
6mer
614-630
0.004
0
IGSF11-AS1
hsa-miR-375
0.852
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_046230.1
Biotype: antisense
Gene id: NR_046230.1 (gene)
Gene Name: IGSF11-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-59
0.028
Not Conserved
6mer
616-641
0.004
1
6mer
643-660
0.003
2
6mer
707-724
0.002
1
6mer
29-46
0.002
0
XLOC_008149
hsa-miR-375
0.852
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017313
Biotype: transcript isomorph
Gene id: XLOC_008149
Gene Name: XLOC_008149
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
145-162
0.039
9
RP4-764O22.1
hsa-miR-375
0.851
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000425900
Biotype: lincRNA
Gene id: ENSG00000232271
Gene Name: RP4-764O22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-147
0.022
1
7mer
140-161
0.012
0
6mer
131-153
0.005
1
RP1-225E12.2
hsa-miR-375
0.851
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591102
Biotype: antisense
Gene id: ENSG00000231329
Gene Name: RP1-225E12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
248-258
0.020
1
7mer
627-650
0.013
1
6mer
468-487
0.006
2
XLOC_006820
hsa-miR-375
0.851
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014735
Biotype: transcript isomorph
Gene id: XLOC_006820
Gene Name: XLOC_006820
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-47
0.031
2
6mer
211-222
0.008
3
IGSF11-AS1
hsa-miR-375
0.851
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000477009
Biotype: antisense
Gene id: ENSG00000239877
Gene Name: IGSF11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-62
0.028
Not Conserved
6mer
619-644
0.004
1
6mer
646-663
0.003
2
6mer
32-49
0.002
0
6mer
710-727
0.002
1
XLOC_011521
hsa-miR-375
0.851
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023282
Biotype: transcript isomorph
Gene id: XLOC_011521
Gene Name: XLOC_011521
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3023-3048
0.025
0
7mer
2892-2916
0.010
0
6mer
2713-2731
0.002
Not Conserved
6mer
1519-1545
0.002
1
XLOC_004362
hsa-miR-375
0.851
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009934
Biotype: transcript isomorph
Gene id: XLOC_004362
Gene Name: XLOC_004362
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2390-2411
0.009
1
6mer
7963-7979
0.007
1
6mer
8252-8277
0.006
0
6mer
79-103
0.006
1
7mer
3531-3554
0.003
0
6mer
6745-6770
0.002
0
6mer
6461-6488
0.002
0
6mer
6806-6825
0.001
0
6mer
6748-6775
0.001
0
6mer
6468-6493
0.001
0
LINC01299
hsa-miR-375
0.851
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520902
Biotype: lincRNA
Gene id: ENSG00000254081
Gene Name: LINC01299
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1657-1674
0.009
1
6mer
19-40
0.007
1
6mer
29-55
0.007
1
6mer
24-51
0.007
1
6mer
14-26
0.006
Not Conserved
6mer
1999-2012
0.003
2
LOC286186
hsa-miR-375
0.851
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_033893.1
Biotype: lincRNA
Gene id: NR_033893.1 (gene)
Gene Name: LOC286186
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1657-1674
0.010
1
6mer
29-55
0.007
1
6mer
24-51
0.007
1
6mer
19-40
0.007
1
6mer
14-26
0.006
Not Conserved
6mer
1999-2012
0.004
2
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