LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
XLOC_005592
hsa-miR-375
0.862
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011439
Biotype: transcript isomorph
Gene id: XLOC_005592
Gene Name: XLOC_005592
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-234
0.030
3
6mer
726-740
0.004
2
6mer
806-830
0.004
1
6mer
3012-3039
0.002
1
AC013394.2
hsa-miR-375
0.861
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557147
Biotype: lincRNA
Gene id: ENSG00000272888
Gene Name: AC013394.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
396-414
0.028
4
6mer
227-249
0.008
5
6mer
250-275
0.005
2
XLOC_013502
hsa-miR-375
0.861
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027863
Biotype: transcript isomorph
Gene id: XLOC_013502
Gene Name: XLOC_013502
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
97-116
0.012
1
7mer
3101-3107
0.010
0
6mer
4213-4233
0.008
0
6mer
1049-1062
0.003
0
6mer
877-895
0.003
0
6mer
2579-2596
0.003
0
6mer
1559-1576
0.002
0
LA16c-381G6.1
hsa-miR-375
0.861
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561511
Biotype: lincRNA
Gene id: ENSG00000260532
Gene Name: LA16c-381G6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1736-1752
0.040
4
XLOC_013857
hsa-miR-375
0.860
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029194
Biotype: transcript isomorph
Gene id: XLOC_013857
Gene Name: XLOC_013857
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
89-110
0.022
0
6mer
208-220
0.018
0
XLOC_012608
hsa-miR-375
0.859
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026232
Biotype: transcript isomorph
Gene id: XLOC_012608
Gene Name: XLOC_012608
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-255
0.035
8
6mer
201-226
0.006
2
RP4-760C5.5
hsa-miR-375
0.859
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449316
Biotype: lincRNA
Gene id: ENSG00000226203
Gene Name: RP4-760C5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
102-121
0.012
1
7mer
3106-3112
0.010
0
6mer
4218-4238
0.008
0
6mer
1054-1067
0.003
0
6mer
2584-2601
0.003
0
6mer
882-900
0.003
0
6mer
1564-1581
0.002
0
RP11-387D10.3
hsa-miR-375
0.859
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500496
Biotype: sense_overlapping
Gene id: ENSG00000245479
Gene Name: RP11-387D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1243-1270
0.007
0
6mer
1271-1275
0.007
0
6mer
1054-1077
0.006
0
6mer
1093-1097
0.005
0
6mer
202-216
0.005
0
6mer
1070-1082
0.005
0
6mer
1090-1102
0.005
0
AC113167.2
hsa-miR-375
0.859
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512941
Biotype: lincRNA
Gene id: ENSG00000249265
Gene Name: AC113167.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
437-463
0.018
2
6mer
499-520
0.008
4
6mer
26-53
0.005
3
6mer
489-506
0.004
0
6mer
446-468
0.004
1
LOC101928618
hsa-miR-375
0.859
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_108089.1
Biotype: lincRNA
Gene id: NR_108089.1 (gene)
Gene Name: LOC101928618
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1019-1031
0.012
1
7mer
1503-1515
0.010
0
6mer
586-611
0.006
2
6mer
734-755
0.004
2
6mer
597-616
0.004
2
6mer
597-621
0.004
2
XLOC_008481
hsa-miR-375
0.858
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018199
Biotype: transcript isomorph
Gene id: XLOC_008481
Gene Name: XLOC_008481
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
492-503
0.021
1
7mer
454-472
0.019
0
XLOC_004195
hsa-miR-375
0.858
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00009182
Biotype: transcript isomorph
Gene id: XLOC_004195
Gene Name: XLOC_004195
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
476-494
0.040
9
XLOC_004366
hsa-miR-375
0.857
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9526-9547
0.009
1
6mer
299-319
0.006
0
6mer
334-349
0.004
1
6mer
9827-9848
0.003
1
6mer
10567-10575
0.003
1
6mer
13227-13254
0.003
Not Conserved
6mer
1620-1639
0.002
1
6mer
13250-13260
0.002
0
6mer
13252-13272
0.002
0
6mer
1856-1874
0.002
1
6mer
2407-2432
0.002
1
6mer
10264-10280
0.002
1
6mer
6049-6074
0.001
0
XLOC_000916
hsa-miR-375
0.856
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001583
Biotype: transcript isomorph
Gene id: XLOC_000916
Gene Name: XLOC_000916
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
316-326
0.040
0
LINC01444
hsa-miR-375
0.856
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581211
Biotype: lincRNA
Gene id: ENSG00000264301
Gene Name: LINC01444
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
325-352
0.040
1
RP11-9G1.3
hsa-miR-375
0.856
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505289
Biotype: lincRNA
Gene id: ENSG00000250241
Gene Name: RP11-9G1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2552-2568
0.011
0
7mer
1467-1488
0.006
1
6mer
236-262
0.005
1
6mer
2474-2497
0.005
1
6mer
2306-2322
0.004
1
6mer
2300-2322
0.003
1
6mer
1796-1809
0.003
0
6mer
2270-2279
0.003
0
XLOC_004536
hsa-miR-375
0.856
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010079
Biotype: transcript isomorph
Gene id: XLOC_004536
Gene Name: XLOC_004536
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-431
0.034
1
6mer
1608-1624
0.004
1
6mer
1613-1638
0.002
2
LINC00680
hsa-miR-375
0.856
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000399751
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1445-1467
0.040
2
PDXDC2P
hsa-miR-375
0.855
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000531894
Biotype: processed_transcript
Gene id: ENSG00000196696
Gene Name: PDXDC2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-98
0.018
Not Conserved
6mer
62-66
0.006
Not Conserved
6mer
3749-3759
0.005
5
6mer
57-61
0.005
Not Conserved
6mer
37-50
0.005
Not Conserved
6mer
1666-1678
0.001
Not Conserved
RP11-89H19.1
hsa-miR-375
0.855
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000380601
Biotype: antisense
Gene id: ENSG00000205537
Gene Name: RP11-89H19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
308-335
0.031
7
6mer
146-161
0.005
4
6mer
516-541
0.004
2
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