LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
INAFM2
hsa-miR-375
0.874
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560415
Biotype: antisense
Gene id: ENSG00000259330
Gene Name: INAFM2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
557-568
0.042
8
XLOC_001583
hsa-miR-375
0.874
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002713
Biotype: transcript isomorph
Gene id: XLOC_001583
Gene Name: XLOC_001583
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2340-2363
0.026
1
6mer
66-87
0.007
0
6mer
197-216
0.006
0
6mer
1559-1580
0.003
0
AC013394.2
hsa-miR-375
0.873
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554669
Biotype: lincRNA
Gene id: ENSG00000272888
Gene Name: AC013394.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
537-555
0.029
4
6mer
368-390
0.008
5
6mer
391-416
0.005
2
LINC00624
hsa-miR-375
0.872
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000619867
Biotype: antisense
Gene id: ENSG00000278811
Gene Name: LINC00624
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2030-2052
0.010
1
7mer
2769-2791
0.010
1
7mer
2548-2575
0.009
2
7mer
2904-2926
0.009
1
6mer
738-760
0.004
1
LINC00877
hsa-miR-375
0.871
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468646
Biotype: lincRNA
Gene id: ENSG00000241163
Gene Name: LINC00877
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
358-379
0.016
4
7mer
915-934
0.012
1
8mer+wobble
2142-2169
0.011
6
6mer
1851-1870
0.003
1
CTA-544A11.1
hsa-miR-375
0.870
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2376-2393
0.012
6
7mer
6970-6986
0.007
0
6mer
482-497
0.005
4
6mer
776-796
0.003
3
6mer
7489-7512
0.002
2
6mer
10737-10763
0.002
2
6mer
8201-8220
0.002
1
6mer
8654-8679
0.002
1
6mer
9647-9671
0.002
1
6mer
7658-7678
0.001
1
6mer
8211-8232
0.001
1
6mer
8201-8226
0.001
0
XLOC_012664
hsa-miR-375
0.869
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026615
Biotype: transcript isomorph
Gene id: XLOC_012664
Gene Name: XLOC_012664
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1663-1688
0.008
0
7mer
752-772
0.008
4
6mer
2798-2815
0.007
0
6mer
129-154
0.006
1
6mer
2642-2646
0.006
0
6mer
2647-2651
0.004
1
6mer
2644-2656
0.003
0
LINC01505
hsa-miR-375
0.867
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444985
Biotype: lincRNA
Gene id: ENSG00000234229
Gene Name: LINC01505
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
300-324
0.020
8
6mer
261-286
0.011
8
6mer
623-631
0.004
1
6mer
1783-1804
0.004
1
7mer
683-700
0.003
Not Conserved
RP11-30K9.5
hsa-miR-375
0.867
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558042
Biotype: antisense
Gene id: ENSG00000259353
Gene Name: RP11-30K9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
90-114
0.032
5
6mer
71-92
0.009
4
XLOC_006976
hsa-miR-375
0.867
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014909
Biotype: transcript isomorph
Gene id: XLOC_006976
Gene Name: XLOC_006976
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
24-46
0.018
1
6mer
149-164
0.016
1
6mer
196-218
0.007
0
RP11-251P6.1
hsa-miR-375
0.867
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435253
Biotype: lincRNA
Gene id: ENSG00000230768
Gene Name: RP11-251P6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1460-1480
0.023
2
6mer
317-341
0.007
2
6mer
991-995
0.005
1
6mer
724-728
0.004
1
6mer
542-553
0.003
0
XLOC_010657
hsa-miR-375
0.867
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022053
Biotype: transcript isomorph
Gene id: XLOC_010657
Gene Name: XLOC_010657
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2-23
0.033
4
6mer
10-36
0.008
3
XLOC_011093
hsa-miR-375
0.866
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022380
Biotype: transcript isomorph
Gene id: XLOC_011093
Gene Name: XLOC_011093
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
350-374
0.041
10
RP11-434D2.12
hsa-miR-375
0.866
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580931
Biotype: lincRNA
Gene id: ENSG00000264422
Gene Name: RP11-434D2.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
106-118
0.037
Not Conserved
6mer
293-307
0.004
Not Conserved
GPR1-AS
hsa-miR-375
0.865
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000623040
Biotype: antisense
Gene id: ENSG00000279220
Gene Name: GPR1-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3208-3233
0.033
0
6mer
2876-2896
0.003
1
6mer
1076-1102
0.002
1
6mer
3354-3375
0.002
1
XLOC_002779
hsa-miR-375
0.864
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006171
Biotype: transcript isomorph
Gene id: XLOC_002779
Gene Name: XLOC_002779
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
393-410
0.022
6
7mer
985-1007
0.011
7
7mer
1544-1555
0.006
1
6mer
2839-2855
0.002
0
LINC00861
hsa-miR-375
0.863
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518964
Biotype: lincRNA
Gene id: ENSG00000245164
Gene Name: LINC00861
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-161
0.020
0
6mer
77-100
0.007
1
6mer
426-443
0.006
1
6mer
24-48
0.005
1
6mer
320-346
0.003
1
OIP5-AS1
hsa-miR-375
0.863
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
860-883
0.009
4
6mer
307-311
0.007
3
6mer
2853-2872
0.005
11
6mer
5740-5763
0.003
4
6mer
2570-2597
0.002
4
6mer
7491-7509
0.002
1
6mer
6910-6924
0.002
3
6mer
7329-7333
0.002
1
6mer
881-901
0.002
1
6mer
4114-4139
0.002
1
6mer
2990-3015
0.002
1
6mer
4782-4791
0.002
0
RP11-203B9.4
hsa-miR-375
0.863
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000590164
Biotype: antisense
Gene id: ENSG00000226803
Gene Name: RP11-203B9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
653-674
0.033
3
6mer
4-15
0.008
1
XLOC_004924
hsa-miR-375
0.862
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9900-9919
0.009
1
7mer
1199-1217
0.009
3
6mer
10953-10964
0.006
2
7mer
3927-3946
0.003
0
9mer
5500-5521
0.003
Not Conserved
6mer
5837-5852
0.002
4
6mer
4867-4883
0.002
3
6mer
3442-3465
0.002
1
6mer
5512-5539
0.002
1
6mer
8647-8661
0.001
0
6mer
5409-5417
0.001
Not Conserved
6mer
6868-6889
0.001
1
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