LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
MALAT1
hsa-miR-375
0.884
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
729-753
0.038
0
6mer
335-353
0.004
1
6mer
7242-7266
0.002
4
RP11-266O8.1
hsa-miR-375
0.884
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553478
Biotype: lincRNA
Gene id: ENSG00000257060
Gene Name: RP11-266O8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-116
0.025
6
7mer
108-132
0.012
1
7mer
522-537
0.007
0
XLOC_001621
hsa-miR-375
0.884
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003817
Biotype: transcript isomorph
Gene id: XLOC_001621
Gene Name: XLOC_001621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1727-1748
0.017
1
7mer
763-788
0.014
0
6mer
797-818
0.007
1
6mer
620-640
0.006
0
AC005324.7
hsa-miR-375
0.883
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433051
Biotype: lincRNA
Gene id: ENSG00000233193
Gene Name: AC005324.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
106-118
0.040
Not Conserved
6mer
293-307
0.003
Not Conserved
RP11-386B13.3
hsa-miR-375
0.883
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511746
Biotype: lincRNA
Gene id: ENSG00000250754
Gene Name: RP11-386B13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
794-813
0.038
14
6mer
40-62
0.005
2
LINC00550
hsa-miR-375
0.883
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_038878.1
Biotype: lincRNA
Gene id: NR_038878.1 (gene)
Gene Name: LINC00550
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
328-349
0.022
1
6mer
410-430
0.007
1
6mer
658-673
0.006
1
6mer
1298-1322
0.003
1
6mer
1522-1544
0.003
1
6mer
1800-1824
0.003
1
XLOC_007078
hsa-miR-375
0.883
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014998
Biotype: transcript isomorph
Gene id: XLOC_007078
Gene Name: XLOC_007078
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
911-932
0.022
0
6mer
536-557
0.012
1
6mer
833-858
0.007
0
6mer
796-811
0.003
Not Conserved
XLOC_010651
hsa-miR-375
0.883
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021516
Biotype: transcript isomorph
Gene id: XLOC_010651
Gene Name: XLOC_010651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
325-346
0.022
1
6mer
407-427
0.007
1
6mer
655-670
0.006
1
6mer
1295-1319
0.003
1
6mer
1519-1541
0.003
1
6mer
1797-1821
0.003
1
XLOC_000633
hsa-miR-375
0.883
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001335
Biotype: transcript isomorph
Gene id: XLOC_000633
Gene Name: XLOC_000633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
421-443
0.013
0
7mer
2796-2811
0.006
1
7mer
1751-1772
0.004
1
7mer
4889-4916
0.004
2
6mer
1622-1649
0.003
3
6mer
6515-6541
0.003
1
6mer
4104-4124
0.002
1
6mer
6003-6026
0.002
1
6mer
6530-6556
0.002
0
6mer
6525-6551
0.001
0
6mer
6525-6546
0.001
0
6mer
1638-1655
0.001
0
6mer
6012-6034
0.001
0
RP11-17A4.4
hsa-miR-375
0.881
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521215
Biotype: lincRNA
Gene id: ENSG00000254055
Gene Name: RP11-17A4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
530-548
0.022
3
7mer
551-569
0.022
1
XLOC_010896
hsa-miR-375
0.880
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022583
Biotype: transcript isomorph
Gene id: XLOC_010896
Gene Name: XLOC_010896
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
620-640
0.018
1
7mer
26-52
0.010
1
6mer
277-296
0.007
1
6mer
8-28
0.004
0
6mer
642-668
0.004
2
XLOC_000543
hsa-miR-375
0.878
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001255
Biotype: transcript isomorph
Gene id: XLOC_000543
Gene Name: XLOC_000543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1603-1622
0.039
7
6mer
1091-1114
0.004
1
RP11-325N19.3
hsa-miR-375
0.878
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499797
Biotype: lincRNA
Gene id: ENSG00000246863
Gene Name: RP11-325N19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2396-2420
0.020
1
7mer
633-655
0.011
1
7mer
435-458
0.007
0
6mer
1242-1266
0.003
0
6mer
1267-1271
0.001
1
6mer
1255-1276
0.001
1
XLOC_010279
hsa-miR-375
0.878
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020261
Biotype: transcript isomorph
Gene id: XLOC_010279
Gene Name: XLOC_010279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2647-2672
0.015
0
6mer
1898-1923
0.010
0
6mer
1632-1654
0.008
0
6mer
1821-1842
0.007
0
6mer
2297-2317
0.004
Not Conserved
RP11-632F7.3
hsa-miR-375
0.877
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513127
Biotype: antisense
Gene id: ENSG00000250906
Gene Name: RP11-632F7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
284-309
0.022
6
7mer
47-70
0.021
0
XLOC_013010
hsa-miR-375
0.877
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1302-1323
0.043
0
LINC00662
hsa-miR-375
0.877
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591338
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
318-344
0.031
0
6mer
4-12
0.011
0
RP11-963H4.5
hsa-miR-375
0.875
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582334
Biotype: lincRNA
Gene id: ENSG00000266114
Gene Name: RP11-963H4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-93
0.028
1
6mer
392-411
0.007
1
6mer
392-416
0.007
2
RP11-744K17.2
hsa-miR-375
0.875
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582527
Biotype: lincRNA
Gene id: ENSG00000266885
Gene Name: RP11-744K17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
629-649
0.019
0
7mer
2788-2811
0.011
0
6mer
2772-2781
0.005
0
6mer
2894-2917
0.005
0
6mer
1695-1721
0.002
0
XLOC_006507
hsa-miR-375
0.875
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013201
Biotype: transcript isomorph
Gene id: XLOC_006507
Gene Name: XLOC_006507
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2141-2165
0.008
0
7mer
6318-6343
0.007
1
6mer
8489-8499
0.006
2
7mer
1538-1550
0.005
4
6mer
7707-7729
0.004
1
6mer
1184-1206
0.002
Not Conserved
6mer
1614-1639
0.002
3
6mer
6022-6045
0.002
1
6mer
4837-4861
0.002
0
6mer
1158-1168
0.001
0
6mer
6261-6284
0.001
1
6mer
4768-4783
0.001
0
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