LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-372-3p


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Gene
miRNA
Score
DIANA Links
RP11-206L10.3
hsa-miR-372-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3887-3904
0.011
0
6mer
3814-3836
0.007
0
9mer
87-111
0.005
Not Conserved
6mer
4484-4504
0.003
Not Conserved
GPR1-AS
hsa-miR-372-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000623040
Biotype: antisense
Gene id: ENSG00000279220
Gene Name: GPR1-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3569-3594
0.007
2
6mer
3470-3492
0.006
1
6mer
3140-3155
0.005
1
9mer
1215-1239
0.003
1
6mer
2534-2549
0.002
0
6mer
2026-2048
0.002
1
6mer
1912-1928
0.001
0
RP11-50C13.2
hsa-miR-372-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561202
Biotype: sense_intronic
Gene id: ENSG00000259476
Gene Name: RP11-50C13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1595-1617
0.013
2
7mer
1281-1305
0.008
3
6mer
1302-1322
0.006
4
XLOC_001117
hsa-miR-372-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001741
Biotype: transcript isomorph
Gene id: XLOC_001117
Gene Name: XLOC_001117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
156-175
0.026
0
HNF1A-AS1
hsa-miR-372-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535301
Biotype: antisense
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-336
0.026
5
RP11-278I4.2
hsa-miR-372-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518362
Biotype: antisense
Gene id: ENSG00000254278
Gene Name: RP11-278I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
934-958
0.018
7
6mer
752-771
0.004
5
6mer
859-878
0.004
1
MYO16-AS2
hsa-miR-372-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000412809
Biotype: antisense
Gene id: ENSG00000229938
Gene Name: MYO16-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
11-30
0.009
3
7mer
242-268
0.009
3
6mer
333-357
0.007
1
HOXA-AS2
hsa-miR-372-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000593438
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-482
0.020
1
6mer
458-474
0.006
0
RP11-342H21.2
hsa-miR-372-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456389
Biotype: antisense
Gene id: ENSG00000231080
Gene Name: RP11-342H21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
825-849
0.014
1
6mer
67-92
0.007
1
6mer
598-610
0.005
1
LINC00665
hsa-miR-372-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000438368
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
376-398
0.015
1
9mer
320-344
0.011
0
MEG3
hsa-miR-372-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000523671
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
503-529
0.022
4
6mer
1802-1826
0.004
1
RP11-61L19.1
hsa-miR-372-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580891
Biotype: sense_intronic
Gene id: ENSG00000266805
Gene Name: RP11-61L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3333-3342
0.012
1
8mer
3374-3398
0.009
0
6mer
2053-2070
0.003
1
6mer
1575-1596
0.002
2
XLOC_013910
hsa-miR-372-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028992
Biotype: transcript isomorph
Gene id: XLOC_013910
Gene Name: XLOC_013910
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
677-699
0.015
1
6mer
770-795
0.006
0
6mer
350-373
0.004
1
GRIK1-AS2
hsa-miR-372-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_033368.1
Biotype: sense
Gene id: NR_033368.1 (gene)
Gene Name: GRIK1-AS2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
564-570
0.026
0
MIR519A2
hsa-miR-372-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597619
Biotype: lincRNA
Gene id: ENSG00000269842
Gene Name: MIR519A2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1938-1956
0.026
1
AC008079.10
hsa-miR-372-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16441-16458
0.005
0
7mer
1704-1721
0.004
5
7mer
11686-11707
0.002
2
6mer
13919-13941
0.002
0
6mer
3671-3692
0.002
1
6mer
16132-16152
0.002
4
6mer
2465-2492
0.002
0
9mer
16897-16921
0.002
1
6mer
2308-2330
0.001
0
6mer
14969-14982
0.001
0
6mer
13079-13103
0.001
1
6mer
17526-17541
0.001
1
RP11-290F5.2
hsa-miR-372-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000317596
Biotype: lincRNA
Gene id: ENSG00000180712
Gene Name: RP11-290F5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Colon Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
861-880
0.012
0
6mer
1497-1524
0.006
2
9mer
245-269
0.004
0
6mer
730-748
0.003
0
RP11-159H22.2
hsa-miR-372-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525833
Biotype: antisense
Gene id: ENSG00000254862
Gene Name: RP11-159H22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1102-1124
0.011
6
6mer
90-103
0.008
4
7mer
622-639
0.007
0
NTRK3-AS1
hsa-miR-372-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569588
Biotype: lincRNA
Gene id: ENSG00000260305
Gene Name: NTRK3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-315
0.018
1
6mer
2163-2181
0.004
1
6mer
740-763
0.003
2
RP3-439F8.1
hsa-miR-372-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426112
Biotype: antisense
Gene id: ENSG00000234869
Gene Name: RP3-439F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-131
0.020
0
6mer
280-297
0.003
0
6mer
269-288
0.003
0
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