LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-372-3p


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Gene
miRNA
Score
DIANA Links
LINC00208
hsa-miR-372-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000304233
Biotype: lincRNA
Gene id: ENSG00000170983
Gene Name: LINC00208
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1912-1932
0.014
0
6mer
1716-1742
0.005
0
6mer
1860-1879
0.004
1
6mer
1788-1806
0.002
0
6mer
839-855
0.002
0
RP11-109A6.2
hsa-miR-372-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000597245
Biotype: antisense
Gene id: ENSG00000237224
Gene Name: RP11-109A6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-39
0.014
1
8mer
617-636
0.013
1
KC6
hsa-miR-372-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000600644
Biotype: lincRNA
Gene id: ENSG00000267313
Gene Name: KC6
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-472
0.016
2
6mer
46-65
0.008
2
6mer
1379-1398
0.002
1
LINC00184
hsa-miR-372-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429269
Biotype: lincRNA
Gene id: ENSG00000224939
Gene Name: LINC00184
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1200-1215
0.009
2
8mer
2141-2166
0.008
1
7mer
980-1001
0.006
1
6mer
1324-1342
0.002
1
RP11-242C19.2
hsa-miR-372-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000497961
Biotype: sense_intronic
Gene id: ENSG00000241886
Gene Name: RP11-242C19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
458-476
0.021
0
6mer
103-129
0.006
2
RP11-251P6.1
hsa-miR-372-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000597635
Biotype: lincRNA
Gene id: ENSG00000230768
Gene Name: RP11-251P6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-235
0.026
0
RP11-251P6.1
hsa-miR-372-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000600656
Biotype: lincRNA
Gene id: ENSG00000230768
Gene Name: RP11-251P6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-240
0.026
0
C12orf36
hsa-miR-372-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000318426
Biotype: lincRNA
Gene id: ENSG00000180861
Gene Name: C12orf36
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1992-2008
0.023
2
6mer
1844-1869
0.002
0
6mer
1971-1984
0.002
Not Conserved
XLOC_002770
hsa-miR-372-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006165
Biotype: transcript isomorph
Gene id: XLOC_002770
Gene Name: XLOC_002770
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
707-731
0.026
5
RP11-615J4.3
hsa-miR-372-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000497896
Biotype: lincRNA
Gene id: ENSG00000239311
Gene Name: RP11-615J4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-77
0.026
3
AGAP11
hsa-miR-372-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444431
Biotype: processed_transcript
Gene id: ENSG00000151303
Gene Name: AGAP11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-180
0.020
1
6mer
992-1009
0.003
1
6mer
1245-1266
0.002
0
6mer
1969-1981
0.001
Not Conserved
RP11-421L21.3
hsa-miR-372-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449473
Biotype: antisense
Gene id: ENSG00000233184
Gene Name: RP11-421L21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
594-607
0.023
3
6mer
665-688
0.003
1
ZNF561-AS1
hsa-miR-372-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585797
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-129
0.020
1
6mer
467-493
0.006
0
RP11-344E13.3
hsa-miR-372-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579168
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
485-507
0.026
0
ZNF561-AS1
hsa-miR-372-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591056
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-115
0.020
1
6mer
488-509
0.006
0
PCAT19
hsa-miR-372-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1179-1203
0.019
1
6mer
2130-2140
0.007
1
XLOC_001564
hsa-miR-372-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003762
Biotype: transcript isomorph
Gene id: XLOC_001564
Gene Name: XLOC_001564
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
909-928
0.026
0
LINC00964
hsa-miR-372-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000510897
Biotype: lincRNA
Gene id: ENSG00000249816
Gene Name: LINC00964
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-408
0.014
3
7mer
1817-1840
0.006
1
9mer
134-158
0.006
1
6mer
1827-1849
0.001
1
RP11-443B7.1
hsa-miR-372-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423175
Biotype: lincRNA
Gene id: ENSG00000238005
Gene Name: RP11-443B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-75
0.026
5
RP11-714L20.1
hsa-miR-372-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507365
Biotype: lincRNA
Gene id: ENSG00000251632
Gene Name: RP11-714L20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1965-1985
0.009
0
9mer
176-200
0.005
0
6mer
730-734
0.004
1
6mer
2070-2095
0.004
2
6mer
910-924
0.003
1
6mer
937-957
0.002
6
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