LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-372-3p


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Gene
miRNA
Score
DIANA Links
AC005307.3
hsa-miR-372-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590072
Biotype: lincRNA
Gene id: ENSG00000267243
Gene Name: AC005307.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-352
0.027
4
RP11-115D19.1
hsa-miR-372-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000612706
Biotype: antisense
Gene id: ENSG00000251095
Gene Name: RP11-115D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2242-2254
0.027
3
XLOC_006462
hsa-miR-372-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013823
Biotype: transcript isomorph
Gene id: XLOC_006462
Gene Name: XLOC_006462
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
20-40
0.027
0
XLOC_004539
hsa-miR-372-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010082
Biotype: transcript isomorph
Gene id: XLOC_004539
Gene Name: XLOC_004539
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1924-1941
0.023
3
6mer
531-547
0.004
1
XLOC_001343
hsa-miR-372-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002818
Biotype: transcript isomorph
Gene id: XLOC_001343
Gene Name: XLOC_001343
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5-29
0.011
1
8mer
628-652
0.011
1
6mer
27-53
0.004
0
ALDH1L1-AS2
hsa-miR-372-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000500525
Biotype: antisense
Gene id: ENSG00000246022
Gene Name: ALDH1L1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
992-1016
0.011
0
9mer
476-494
0.009
0
7mer
1798-1817
0.007
0
RP3-468B3.2
hsa-miR-372-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000530000
Biotype: lincRNA
Gene id: ENSG00000233183
Gene Name: RP3-468B3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1617-1636
0.008
1
6mer
131-154
0.007
1
6mer
233-258
0.005
1
6mer
1472-1487
0.003
3
8mer
1806-1828
0.002
0
6mer
3577-3593
0.001
0
6mer
4240-4258
0.001
1
RP11-613D13.5
hsa-miR-372-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528765
Biotype: antisense
Gene id: ENSG00000246250
Gene Name: RP11-613D13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
384-401
0.027
0
XLOC_000623
hsa-miR-372-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000010
Biotype: transcript isomorph
Gene id: XLOC_000623
Gene Name: XLOC_000623
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1200-1215
0.009
2
8mer
2141-2166
0.009
1
7mer
980-1001
0.006
1
6mer
1324-1342
0.002
1
OSMR-AS1
hsa-miR-372-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513480
Biotype: lincRNA
Gene id: ENSG00000249740
Gene Name: OSMR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-162
0.027
4
RP11-705C15.5
hsa-miR-372-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000573622
Biotype: processed_transcript
Gene id: ENSG00000272917
Gene Name: RP11-705C15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-263
0.018
0
7mer
323-342
0.009
2
MIR181A1HG
hsa-miR-372-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432296
Biotype: lincRNA
Gene id: ENSG00000229989
Gene Name: MIR181A1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
865-890
0.026
3
ATP6V0E2-AS1
hsa-miR-372-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000488315
Biotype: antisense
Gene id: ENSG00000204934
Gene Name: ATP6V0E2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-82
0.019
Not Conserved
9mer
656-671
0.004
Not Conserved
6mer
1974-1986
0.003
0
LOC100506022
hsa-miR-372-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_104623.1
Biotype: lincRNA
Gene id: NR_104623.1 (gene)
Gene Name: LOC100506022
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2135-2158
0.013
0
7mer
50-60
0.010
Not Conserved
9mer
2088-2112
0.004
0
XLOC_008748
hsa-miR-372-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018451
Biotype: transcript isomorph
Gene id: XLOC_008748
Gene Name: XLOC_008748
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-171
0.026
1
RP11-486P11.1
hsa-miR-372-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000590912
Biotype: lincRNA
Gene id: ENSG00000267055
Gene Name: RP11-486P11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
539-556
0.026
1
RP11-280O1.2
hsa-miR-372-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438275
Biotype: antisense
Gene id: ENSG00000237463
Gene Name: RP11-280O1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2293-2308
0.015
4
8mer
691-710
0.009
1
6mer
273-290
0.003
Not Conserved
MIR4313
hsa-miR-372-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561777
Biotype: lincRNA
Gene id: ENSG00000261043
Gene Name: MIR4313
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
206-227
0.016
1
6mer
2848-2872
0.010
0
RP3-368A4.6
hsa-miR-372-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604070
Biotype: sense_intronic
Gene id: ENSG00000271533
Gene Name: RP3-368A4.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
117-133
0.006
1
6mer
462-474
0.005
1
6mer
3552-3577
0.005
0
6mer
716-738
0.004
1
6mer
2604-2627
0.003
2
6mer
1669-1687
0.003
1
RP11-66B24.4
hsa-miR-372-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560351
Biotype: antisense
Gene id: ENSG00000259583
Gene Name: RP11-66B24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3051-3063
0.009
1
8mer
928-947
0.005
0
7mer
800-815
0.004
0
7mer
501-520
0.003
Not Conserved
6mer
576-596
0.003
1
6mer
696-715
0.002
Not Conserved
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