LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-372-3p


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Gene
miRNA
Score
DIANA Links
RP11-46H11.3
hsa-miR-372-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503695
Biotype: lincRNA
Gene id: ENSG00000250790
Gene Name: RP11-46H11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
218-238
0.014
0
6mer
830-842
0.013
0
ZNF561-AS1
hsa-miR-372-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587536
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
93-117
0.022
1
6mer
532-558
0.005
0
LINC00964
hsa-miR-372-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027321.1
Biotype: lincRNA
Gene id: NR_027321.1 (gene)
Gene Name: LINC00964
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
434-455
0.015
3
7mer
1864-1887
0.006
1
9mer
181-205
0.006
1
6mer
1874-1896
0.001
1
AC010974.3
hsa-miR-372-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450509
Biotype: antisense
Gene id: ENSG00000230065
Gene Name: AC010974.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
74-99
0.018
2
6mer
120-137
0.009
4
XLOC_011130
hsa-miR-372-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022413
Biotype: transcript isomorph
Gene id: XLOC_011130
Gene Name: XLOC_011130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
517-532
0.010
1
6mer
1405-1423
0.009
9
8mer
81-106
0.008
1
AC097713.4
hsa-miR-372-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439798
Biotype: lincRNA
Gene id: ENSG00000231682
Gene Name: AC097713.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
191-210
0.027
1
DSCR9
hsa-miR-372-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000585273
Biotype: lincRNA
Gene id: ENSG00000230366
Gene Name: DSCR9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
619-645
0.019
1
9mer
167-191
0.008
1
XLOC_009474
hsa-miR-372-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2539-2558
0.013
1
7mer
4291-4312
0.011
4
6mer
3171-3192
0.002
0
6mer
4498-4518
0.001
0
RP11-317B7.3
hsa-miR-372-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502636
Biotype: antisense
Gene id: ENSG00000250623
Gene Name: RP11-317B7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-156
0.022
0
6mer
449-473
0.005
0
LINC01485
hsa-miR-372-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522731
Biotype: lincRNA
Gene id: ENSG00000254211
Gene Name: LINC01485
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-114
0.012
1
7mer
217-242
0.010
2
8mer
424-444
0.005
0
LINC00664
hsa-miR-372-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599078
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3401-3422
0.011
1
6mer
3457-3478
0.010
1
8mer
528-551
0.004
Not Conserved
6mer
1525-1547
0.002
0
LOC100506022
hsa-miR-372-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_104622.1
Biotype: lincRNA
Gene id: NR_104622.1 (gene)
Gene Name: LOC100506022
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2135-2158
0.013
0
7mer
50-60
0.010
Not Conserved
9mer
2088-2112
0.004
0
XLOC_009483
hsa-miR-372-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019682
Biotype: transcript isomorph
Gene id: XLOC_009483
Gene Name: XLOC_009483
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-69
0.021
0
7mer
2370-2391
0.003
0
7mer
1684-1706
0.001
0
6mer
1863-1884
0.001
0
AC098973.1
hsa-miR-372-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432163
Biotype: lincRNA
Gene id: ENSG00000229243
Gene Name: AC098973.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
769-787
0.021
4
7mer
2095-2122
0.006
0
XLOC_004407
hsa-miR-372-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009981
Biotype: transcript isomorph
Gene id: XLOC_004407
Gene Name: XLOC_004407
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
568-583
0.027
1
XLOC_012011
hsa-miR-372-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024730
Biotype: transcript isomorph
Gene id: XLOC_012011
Gene Name: XLOC_012011
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5518-5542
0.010
1
9mer
5218-5238
0.005
1
9mer
448-468
0.004
1
7mer
4359-4375
0.004
1
9mer
3940-3964
0.002
0
6mer
2637-2647
0.001
1
6mer
3725-3746
0.001
0
LINC01426
hsa-miR-372-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420877
Biotype: antisense
Gene id: ENSG00000234380
Gene Name: LINC01426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-58
0.008
1
7mer
1685-1702
0.005
1
6mer
1921-1944
0.004
1
8mer
1607-1627
0.004
0
6mer
2562-2583
0.003
0
6mer
745-767
0.003
1
RP11-145O15.3
hsa-miR-372-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000529018
Biotype: antisense
Gene id: ENSG00000255069
Gene Name: RP11-145O15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1513-1526
0.027
7
RP11-733C7.1
hsa-miR-372-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507220
Biotype: lincRNA
Gene id: ENSG00000249091
Gene Name: RP11-733C7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-268
0.019
2
6mer
267-289
0.008
1
RP11-84A14.4
hsa-miR-372-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445884
Biotype: sense_intronic
Gene id: ENSG00000228150
Gene Name: RP11-84A14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
335-349
0.027
0
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