LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-372-3p


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Gene
miRNA
Score
DIANA Links
XLOC_009222
hsa-miR-372-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4154-4178
0.019
0
6mer
596-617
0.010
0
XLOC_007644
hsa-miR-372-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016268
Biotype: transcript isomorph
Gene id: XLOC_007644
Gene Name: XLOC_007644
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1731-1738
0.029
1
RP11-498P14.4
hsa-miR-372-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000420204
Biotype: lincRNA
Gene id: ENSG00000235494
Gene Name: RP11-498P14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-276
0.029
Not Conserved
XLOC_004053
hsa-miR-372-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008556
Biotype: transcript isomorph
Gene id: XLOC_004053
Gene Name: XLOC_004053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
538-565
0.022
Not Conserved
6mer
3275-3291
0.004
0
6mer
712-737
0.002
0
RP11-582J16.4
hsa-miR-372-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514980
Biotype: antisense
Gene id: ENSG00000251034
Gene Name: RP11-582J16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-158
0.013
2
8mer
452-468
0.011
0
6mer
497-517
0.005
2
XLOC_006035
hsa-miR-372-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013404
Biotype: transcript isomorph
Gene id: XLOC_006035
Gene Name: XLOC_006035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1209-1235
0.021
1
6mer
605-624
0.004
1
6mer
993-1019
0.003
1
GRM5-AS1
hsa-miR-372-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526448
Biotype: antisense
Gene id: ENSG00000255082
Gene Name: GRM5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
298-324
0.018
2
7mer
3704-3725
0.009
9
6mer
1159-1175
0.002
3
CTD-2313F11.1
hsa-miR-372-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000608929
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-301
0.029
0
RP11-473M20.16
hsa-miR-372-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570843
Biotype: lincRNA
Gene id: ENSG00000261889
Gene Name: RP11-473M20.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
175-199
0.018
1
6mer
455-479
0.010
1
SNHG14
hsa-miR-372-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
8567-8592
0.008
1
8mer
5986-6007
0.007
1
7mer
3721-3746
0.007
1
6mer
4771-4793
0.003
1
6mer
4402-4423
0.002
1
6mer
6127-6151
0.002
1
NOP14-AS1
hsa-miR-372-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507702
Biotype: antisense
Gene id: ENSG00000249673
Gene Name: NOP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-95
0.028
0
RP11-77H9.8
hsa-miR-372-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564485
Biotype: lincRNA
Gene id: ENSG00000260979
Gene Name: RP11-77H9.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-414
0.028
1
RP11-643A5.2
hsa-miR-372-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557976
Biotype: lincRNA
Gene id: ENSG00000259669
Gene Name: RP11-643A5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-89
0.012
2
6mer
101-117
0.006
1
6mer
601-627
0.005
0
6mer
984-1001
0.005
Not Conserved
RP11-347I19.7
hsa-miR-372-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613093
Biotype: lincRNA
Gene id: ENSG00000274292
Gene Name: RP11-347I19.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
459-473
0.015
2
7mer
736-757
0.014
4
RP11-681H18.2
hsa-miR-372-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000612252
Biotype: lincRNA
Gene id: ENSG00000277801
Gene Name: RP11-681H18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
556-575
0.028
9
RP11-282K24.3
hsa-miR-372-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501211
Biotype: sense_intronic
Gene id: ENSG00000253284
Gene Name: RP11-282K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4168-4193
0.009
0
6mer
5366-5389
0.006
0
7mer
1137-1161
0.004
1
6mer
575-598
0.004
1
6mer
4619-4637
0.004
1
6mer
1178-1200
0.001
0
CTD-2313F11.1
hsa-miR-372-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000618221
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-261
0.028
0
EAF1-AS1
hsa-miR-372-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608780
Biotype: antisense
Gene id: ENSG00000249786
Gene Name: EAF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
697-716
0.015
1
8mer
444-465
0.014
1
CTA-929C8.9
hsa-miR-372-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16191-16217
0.004
1
7mer
14544-14561
0.004
0
8mer
23698-23721
0.004
1
6mer
10644-10669
0.002
0
9mer
1621-1644
0.002
1
6mer
13851-13875
0.002
0
6mer
2400-2418
0.002
1
6mer
22285-22303
0.002
Not Conserved
6mer
16768-16787
0.002
0
6mer
5634-5660
0.002
1
6mer
22508-22531
0.001
0
6mer
17081-17097
0.001
0
6mer
17865-17881
0.001
0
6mer
17138-17160
0.001
0
RP11-60H5.1
hsa-miR-372-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567718
Biotype: lincRNA
Gene id: ENSG00000260840
Gene Name: RP11-60H5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-56
0.014
0
7mer
615-642
0.007
0
6mer
446-465
0.006
2
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