LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-372-3p


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Gene
miRNA
Score
DIANA Links
GPC5-AS1
hsa-miR-372-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000419288
Biotype: antisense
Gene id: ENSG00000235984
Gene Name: GPC5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
362-379
0.025
5
8mer
256-274
0.009
1
RP11-99A1.2
hsa-miR-372-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000590604
Biotype: lincRNA
Gene id: ENSG00000267311
Gene Name: RP11-99A1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
964-987
0.024
1
6mer
478-490
0.006
2
6mer
234-255
0.004
1
HOTAIRM1
hsa-miR-372-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000428939
Biotype: antisense
Gene id: ENSG00000233429
Gene Name: HOTAIRM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
725-747
0.024
8
6mer
737-760
0.010
7
XLOC_014159
hsa-miR-372-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029516
Biotype: transcript isomorph
Gene id: XLOC_014159
Gene Name: XLOC_014159
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2455-2481
0.023
1
9mer
1837-1857
0.004
1
9mer
2637-2661
0.004
Not Conserved
6mer
135-158
0.003
1
RP11-64C1.1
hsa-miR-372-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492683
Biotype: lincRNA
Gene id: ENSG00000240708
Gene Name: RP11-64C1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1457-1475
0.011
0
7mer
1086-1100
0.011
1
6mer
1302-1322
0.007
0
6mer
1468-1491
0.005
0
RP11-380B4.3
hsa-miR-372-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617901
Biotype: lincRNA
Gene id: ENSG00000277151
Gene Name: RP11-380B4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3308-3325
0.014
5
6mer
497-519
0.006
1
7mer
1001-1017
0.006
2
6mer
2190-2207
0.002
1
6mer
3913-3932
0.002
0
6mer
1001-1023
0.002
1
6mer
2325-2344
0.002
0
LA16c-313D11.12
hsa-miR-372-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575305
Biotype: retained_intron
Gene id: ENSG00000261659
Gene Name: LA16c-313D11.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-204
0.034
11
AC005324.6
hsa-miR-372-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433873
Biotype: antisense
Gene id: ENSG00000233002
Gene Name: AC005324.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-156
0.034
1
LINC01204
hsa-miR-372-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000609127
Biotype: lincRNA
Gene id: ENSG00000229563
Gene Name: LINC01204
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2243-2258
0.019
3
8mer
1931-1949
0.011
0
6mer
1831-1855
0.004
2
XLOC_001963
hsa-miR-372-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004113
Biotype: transcript isomorph
Gene id: XLOC_001963
Gene Name: XLOC_001963
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-548
0.018
3
7mer
888-909
0.008
1
6mer
324-340
0.005
1
6mer
663-681
0.003
2
LINC01410
hsa-miR-372-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424345
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1764-1782
0.024
0
6mer
945-969
0.010
0
XLOC_005224
hsa-miR-372-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011763
Biotype: transcript isomorph
Gene id: XLOC_005224
Gene Name: XLOC_005224
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
244-266
0.018
0
6mer
804-828
0.005
1
9mer
3834-3858
0.005
0
6mer
1127-1148
0.002
0
9mer
2219-2243
0.002
0
6mer
1238-1260
0.002
0
XLOC_008737
hsa-miR-372-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018445
Biotype: transcript isomorph
Gene id: XLOC_008737
Gene Name: XLOC_008737
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1873-1896
0.012
1
8mer
2447-2471
0.007
1
9mer
1474-1498
0.005
1
6mer
1955-1982
0.004
2
6mer
245-263
0.004
0
9mer
1328-1352
0.002
1
PROX1-AS1
hsa-miR-372-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433082
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
615-634
0.022
1
8mer
1948-1970
0.005
1
7mer
4303-4324
0.004
1
6mer
680-705
0.003
1
RP11-212E8.1
hsa-miR-372-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577556
Biotype: lincRNA
Gene id: ENSG00000264174
Gene Name: RP11-212E8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-30
0.019
2
6mer
523-547
0.015
5
XLOC_010966
hsa-miR-372-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022669
Biotype: transcript isomorph
Gene id: XLOC_010966
Gene Name: XLOC_010966
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-253
0.017
2
9mer
685-706
0.011
0
6mer
410-428
0.004
1
8mer+mismatch
1423-1445
0.002
0
CTB-89H12.4
hsa-miR-372-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
574-594
0.011
10
7mer
560-575
0.011
10
6mer
535-556
0.009
10
9mer
6993-7017
0.002
1
XLOC_005557
hsa-miR-372-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012630
Biotype: transcript isomorph
Gene id: XLOC_005557
Gene Name: XLOC_005557
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
969-988
0.033
0
LINC00691
hsa-miR-372-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436123
Biotype: lincRNA
Gene id: ENSG00000224074
Gene Name: LINC00691
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-176
0.029
1
8mer
752-773
0.004
0
XLOC_010474
hsa-miR-372-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021875
Biotype: transcript isomorph
Gene id: XLOC_010474
Gene Name: XLOC_010474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
424-444
0.033
1
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