LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-372-3p


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Gene
miRNA
Score
DIANA Links
RP11-254F7.2
hsa-miR-372-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567540
Biotype: lincRNA
Gene id: ENSG00000260077
Gene Name: RP11-254F7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1469-1492
0.020
1
6mer
34-59
0.009
1
6mer
54-72
0.006
1
6mer
82-103
0.004
Not Conserved
RP11-357F12.1
hsa-miR-372-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506656
Biotype: lincRNA
Gene id: ENSG00000248148
Gene Name: RP11-357F12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-458
0.039
Not Conserved
RP11-212D3.4
hsa-miR-372-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000413763
Biotype: lincRNA
Gene id: ENSG00000226854
Gene Name: RP11-212D3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1153-1178
0.023
0
6mer
492-514
0.016
0
XLOC_001931
hsa-miR-372-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004095
Biotype: transcript isomorph
Gene id: XLOC_001931
Gene Name: XLOC_001931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-227
0.039
0
RP11-17M16.2
hsa-miR-372-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581996
Biotype: antisense
Gene id: ENSG00000265778
Gene Name: RP11-17M16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
873-892
0.026
5
6mer
1013-1032
0.012
6
HCG18
hsa-miR-372-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602516
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1712-1737
0.019
2
6mer
148-169
0.008
2
9mer
850-870
0.005
1
6mer
1927-1954
0.004
1
6mer
1530-1549
0.002
Not Conserved
DARS-AS1
hsa-miR-372-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596410
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
693-713
0.028
6
8mer
20-39
0.011
0
RP11-81A1.6
hsa-miR-372-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000618835
Biotype: sense_intronic
Gene id: ENSG00000278600
Gene Name: RP11-81A1.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1840-1862
0.012
1
7mer
720-737
0.011
3
6mer
1875-1896
0.009
6
6mer
2154-2168
0.007
1
RP11-1000B6.7
hsa-miR-372-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616244
Biotype: sense_intronic
Gene id: ENSG00000276724
Gene Name: RP11-1000B6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
142-156
0.022
0
6mer
316-342
0.016
0
NAMA
hsa-miR-372-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_102271.1
Biotype: lincRNA
Gene id: NR_102271.1 (gene)
Gene Name: NAMA
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1204-1225
0.038
8
RP11-506K6.4
hsa-miR-372-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607565
Biotype: antisense
Gene id: ENSG00000272320
Gene Name: RP11-506K6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1883-1908
0.030
1
6mer
1555-1570
0.008
3
XLOC_007087
hsa-miR-372-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015010
Biotype: transcript isomorph
Gene id: XLOC_007087
Gene Name: XLOC_007087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-293
0.028
2
7mer
3939-3959
0.003
0
6mer
851-863
0.003
1
6mer
3434-3451
0.003
0
6mer
829-849
0.002
1
NR2F2-AS1
hsa-miR-372-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000502125
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
31-53
0.028
8
6mer
585-610
0.005
2
7mer
533-559
0.004
1
6mer
540-565
0.002
1
XLOC_011949
hsa-miR-372-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024661
Biotype: transcript isomorph
Gene id: XLOC_011949
Gene Name: XLOC_011949
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1118-1139
0.027
11
6mer
2111-2137
0.008
7
6mer
1999-2018
0.003
3
XLOC_004229
hsa-miR-372-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008716
Biotype: transcript isomorph
Gene id: XLOC_004229
Gene Name: XLOC_004229
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-171
0.026
1
7mer
591-613
0.012
1
AC012361.1
hsa-miR-372-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447260
Biotype: lincRNA
Gene id: ENSG00000236436
Gene Name: AC012361.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1343-1369
0.019
3
7mer
182-203
0.009
Not Conserved
6mer
1153-1171
0.005
1
6mer
863-867
0.004
0
TTTY15
hsa-miR-372-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000457658
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
572-584
0.038
0
CTC-457E21.1
hsa-miR-372-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000562262
Biotype: sense_intronic
Gene id: ENSG00000260599
Gene Name: CTC-457E21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2708-2733
0.020
0
6mer
25-51
0.009
0
6mer
3068-3072
0.008
0
XLOC_012351
hsa-miR-372-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025203
Biotype: transcript isomorph
Gene id: XLOC_012351
Gene Name: XLOC_012351
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
477-502
0.037
0
FGF14-IT1
hsa-miR-372-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607251
Biotype: sense_intronic
Gene id: ENSG00000243319
Gene Name: FGF14-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-372-3p
Sequence: aaagugcugcgacauuugagcgu
MirBase ID: MIMAT0000724
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1496-1518
0.024
8
7mer
217-235
0.013
2
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