LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
RP11-4B14.3
hsa-miR-363-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482559
Biotype: lincRNA
Gene id: ENSG00000239381
Gene Name: RP11-4B14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
369-388
0.034
15
CTA-445C9.14
hsa-miR-363-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000566814
Biotype: antisense
Gene id: ENSG00000261188
Gene Name: CTA-445C9.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
665-688
0.012
Not Conserved
7mer
1976-1988
0.011
0
7mer
1292-1313
0.007
1
6mer
867-889
0.004
1
RP11-374M1.2
hsa-miR-363-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612999
Biotype: retained_intron
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-32
0.034
0
XLOC_009914
hsa-miR-363-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020597
Biotype: transcript isomorph
Gene id: XLOC_009914
Gene Name: XLOC_009914
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
550-575
0.027
1
6mer
787-791
0.007
1
RP11-374M1.2
hsa-miR-363-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443347
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14-35
0.034
0
RP11-521O16.2
hsa-miR-363-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000564121
Biotype: lincRNA
Gene id: ENSG00000260163
Gene Name: RP11-521O16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3841-3860
0.023
1
7mer
895-903
0.009
2
6mer
2846-2853
0.002
1
RP11-378J18.9
hsa-miR-363-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000617276
Biotype: lincRNA
Gene id: ENSG00000276997
Gene Name: RP11-378J18.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-90
0.034
1
LINC01087
hsa-miR-363-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431979
Biotype: lincRNA
Gene id: ENSG00000224559
Gene Name: LINC01087
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
714-719
0.011
1
6mer
3103-3121
0.008
1
6mer
3364-3387
0.008
1
6mer
2555-2578
0.003
0
6mer
1911-1928
0.003
0
RP11-727A23.4
hsa-miR-363-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528133
Biotype: sense_overlapping
Gene id: ENSG00000254676
Gene Name: RP11-727A23.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
870-887
0.031
0
6mer
619-642
0.003
0
AC097499.1
hsa-miR-363-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000430692
Biotype: lincRNA
Gene id: ENSG00000235491
Gene Name: AC097499.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-480
0.024
1
6mer
207-230
0.010
2
RP11-744K17.2
hsa-miR-363-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582527
Biotype: lincRNA
Gene id: ENSG00000266885
Gene Name: RP11-744K17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3462-3478
0.016
0
6mer
1357-1370
0.009
1
6mer
2818-2842
0.008
0
RP6-91H8.5
hsa-miR-363-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000602396
Biotype: lincRNA
Gene id: ENSG00000269945
Gene Name: RP6-91H8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
149-171
0.015
0
7mer
149-163
0.008
0
6mer
3293-3319
0.004
0
6mer
3332-3344
0.003
0
6mer
2195-2220
0.002
2
RP11-67L2.2
hsa-miR-363-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610128
Biotype: lincRNA
Gene id: ENSG00000273033
Gene Name: RP11-67L2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
399-416
0.015
1
6mer
5431-5457
0.013
5
7mer
4795-4805
0.005
1
RP1-168L15.5
hsa-miR-363-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000568025
Biotype: antisense
Gene id: ENSG00000261420
Gene Name: RP1-168L15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1459-1483
0.033
1
RP11-360L9.7
hsa-miR-363-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524133
Biotype: antisense
Gene id: ENSG00000253174
Gene Name: RP11-360L9.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-256
0.026
1
6mer
473-498
0.007
3
LINC00461
hsa-miR-363-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505030
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3038-3057
0.017
8
7mer
663-684
0.007
1
6mer
2844-2869
0.006
9
6mer
1147-1167
0.002
1
XLOC_008422
hsa-miR-363-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018143
Biotype: transcript isomorph
Gene id: XLOC_008422
Gene Name: XLOC_008422
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
663-687
0.033
0
AC023347.1
hsa-miR-363-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435352
Biotype: lincRNA
Gene id: ENSG00000235774
Gene Name: AC023347.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
424-439
0.020
1
6mer
588-602
0.012
2
RP11-132A1.4
hsa-miR-363-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419422
Biotype: antisense
Gene id: ENSG00000232445
Gene Name: RP11-132A1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
233-252
0.017
1
6mer
451-473
0.016
1
RP11-65J3.3
hsa-miR-363-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436510
Biotype: lincRNA
Gene id: ENSG00000230676
Gene Name: RP11-65J3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-39
0.028
0
6mer
927-947
0.003
3
6mer
690-713
0.002
0
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