LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
LINC01021
hsa-miR-363-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514844
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
624-645
0.030
2
7mer
197-221
0.006
0
XLOC_006058
hsa-miR-363-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013423
Biotype: transcript isomorph
Gene id: XLOC_006058
Gene Name: XLOC_006058
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
118-131
0.027
1
6mer
248-267
0.009
0
FAM66C
hsa-miR-363-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535567
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
671-685
0.036
1
ESRG
hsa-miR-363-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000583516
Biotype: sense_intronic
Gene id: ENSG00000265992
Gene Name: ESRG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-50
0.023
7
6mer
59-82
0.007
3
7mer
1341-1358
0.002
Not Conserved
6mer
2125-2131
0.002
Not Conserved
6mer
1672-1682
0.001
Not Conserved
LL22NC03-22D1.1
hsa-miR-363-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8957-8973
0.005
0
7mer
6041-6066
0.003
1
6mer
10040-10059
0.003
2
6mer
27958-27970
0.003
1
6mer
21558-21581
0.002
1
7mer
10904-10922
0.002
Not Conserved
6mer
16130-16144
0.002
1
7mer
22053-22067
0.002
1
7mer
6047-6072
0.002
0
6mer
14618-14643
0.002
0
6mer
23810-23828
0.002
1
6mer
7233-7242
0.002
0
6mer
20033-20048
0.002
Not Conserved
6mer
11790-11812
0.001
1
6mer
3763-3789
0.001
1
6mer
24350-24371
0.001
1
6mer
22102-22116
0.001
1
XLOC_006111
hsa-miR-363-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013454
Biotype: transcript isomorph
Gene id: XLOC_006111
Gene Name: XLOC_006111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
851-874
0.021
1
7mer
844-859
0.015
0
AC007228.9
hsa-miR-363-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000602145
Biotype: lincRNA
Gene id: ENSG00000268568
Gene Name: AC007228.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-150
0.036
1
XLOC_007012
hsa-miR-363-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014938
Biotype: transcript isomorph
Gene id: XLOC_007012
Gene Name: XLOC_007012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
367-391
0.036
1
CTA-796E4.5
hsa-miR-363-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
527-547
0.005
1
6mer
18551-18569
0.003
1
6mer
7677-7692
0.003
2
7mer
14771-14783
0.003
0
6mer
17339-17358
0.003
3
6mer
18003-18023
0.002
0
6mer
2359-2370
0.002
1
7mer
29516-29531
0.002
Not Conserved
6mer
21493-21507
0.002
2
6mer
4305-4315
0.002
1
6mer
5840-5864
0.002
1
6mer
23313-23335
0.002
0
6mer
3594-3612
0.002
1
6mer
6630-6653
0.002
1
6mer
21366-21381
0.001
2
6mer
20743-20769
0.001
0
6mer
29095-29119
0.001
Not Conserved
XLOC_005587
hsa-miR-363-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012055
Biotype: transcript isomorph
Gene id: XLOC_005587
Gene Name: XLOC_005587
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
984-1008
0.016
0
7mer
1644-1652
0.010
1
7mer
456-470
0.004
0
6mer
407-421
0.003
1
6mer
1362-1374
0.002
1
RP11-584P21.2
hsa-miR-363-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502400
Biotype: lincRNA
Gene id: ENSG00000250075
Gene Name: RP11-584P21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
211-222
0.016
1
6mer
147-170
0.010
1
6mer
410-435
0.010
1
RPARP-AS1
hsa-miR-363-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000598368
Biotype: retained_intron
Gene id: ENSG00000269609
Gene Name: RPARP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-36
0.016
1
7mer
319-337
0.010
1
7mer
73-87
0.007
1
6mer
2216-2234
0.003
0
CTC-250I14.3
hsa-miR-363-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591825
Biotype: antisense
Gene id: ENSG00000267512
Gene Name: CTC-250I14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-375
0.035
6
RP11-46H11.3
hsa-miR-363-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503695
Biotype: lincRNA
Gene id: ENSG00000250790
Gene Name: RP11-46H11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
396-422
0.020
0
7mer
484-510
0.016
0
XLOC_011699
hsa-miR-363-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024376
Biotype: transcript isomorph
Gene id: XLOC_011699
Gene Name: XLOC_011699
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
337-364
0.021
0
6mer
50-61
0.014
0
EPB41L4A-AS2
hsa-miR-363-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_027706.1
Biotype: lincRNA
Gene id: NR_027706.1 (gene)
Gene Name: EPB41L4A-AS2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1317-1342
0.025
0
7mer
933-955
0.011
4
RP11-347J14.7
hsa-miR-363-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423499
Biotype: lincRNA
Gene id: ENSG00000231140
Gene Name: RP11-347J14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
330-347
0.022
1
8mer
910-924
0.013
0
RP11-522N14.2
hsa-miR-363-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539391
Biotype: lincRNA
Gene id: ENSG00000256596
Gene Name: RP11-522N14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-97
0.013
0
7mer
716-731
0.010
0
6mer
375-397
0.009
1
6mer
1667-1684
0.004
0
LINC01021
hsa-miR-363-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505775
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
903-924
0.029
2
7mer
197-221
0.006
0
RP3-412A9.17
hsa-miR-363-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3282-3296
0.006
1
7mer
9371-9392
0.004
0
7mer
4588-4602
0.004
1
7mer
15417-15432
0.004
1
7mer
7705-7720
0.003
2
6mer
11326-11339
0.003
3
7mer
7430-7444
0.003
0
6mer
12002-12016
0.002
1
6mer
15670-15691
0.002
1
6mer
3006-3020
0.002
1
6mer
14771-14784
0.001
0
7mer
12189-12207
0.001
0
6mer
15703-15716
0.001
0
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