LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
RP11-234G16.5
hsa-miR-363-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000614150
Biotype: antisense
Gene id: ENSG00000275005
Gene Name: RP11-234G16.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-502
0.024
10
6mer
265-277
0.015
14
RP5-1014D13.2
hsa-miR-363-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
196-218
0.009
0
8mer
7475-7482
0.008
0
7mer
18164-18179
0.006
0
7mer
9449-9468
0.004
1
7mer
14830-14852
0.003
0
6mer
9098-9120
0.003
1
7mer
5303-5318
0.002
0
7mer
2839-2861
0.002
Not Conserved
7mer
14388-14402
0.002
1
6mer
2889-2902
0.001
0
RP11-490B18.6
hsa-miR-363-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000611726
Biotype: antisense
Gene id: ENSG00000276523
Gene Name: RP11-490B18.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
423-441
0.038
1
RP11-9G1.3
hsa-miR-363-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505289
Biotype: lincRNA
Gene id: ENSG00000250241
Gene Name: RP11-9G1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-77
0.036
1
6mer
631-644
0.003
0
CTC-559E9.6
hsa-miR-363-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589657
Biotype: antisense
Gene id: ENSG00000267419
Gene Name: CTC-559E9.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
637-650
0.025
1
7mer
726-740
0.013
0
ADAM20P1
hsa-miR-363-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556964
Biotype: lincRNA
Gene id: ENSG00000259158
Gene Name: ADAM20P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3-10
0.010
2
7mer
385-410
0.009
4
6mer
38-42
0.007
1
6mer
1201-1215
0.005
5
6mer
436-461
0.004
0
6mer
986-1000
0.003
1
RP11-269F21.3
hsa-miR-363-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511219
Biotype: lincRNA
Gene id: ENSG00000249815
Gene Name: RP11-269F21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
90-116
0.023
1
6mer
285-299
0.015
1
LINC00461
hsa-miR-363-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500197
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3038-3057
0.020
8
7mer
663-684
0.009
1
6mer
2844-2869
0.006
9
6mer
1147-1167
0.003
1
RP4-569M23.2
hsa-miR-363-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000413818
Biotype: antisense
Gene id: ENSG00000231119
Gene Name: RP4-569M23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
908-931
0.009
5
6mer
1269-1296
0.007
7
7mer
1104-1121
0.007
4
6mer
1220-1233
0.007
8
6mer
605-625
0.007
5
PCAT19
hsa-miR-363-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
735-761
0.017
1
6mer
1457-1472
0.010
1
7mer
1421-1445
0.006
1
6mer
1190-1211
0.004
1
DLX6-AS1
hsa-miR-363-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000605417
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4054-4078
0.018
11
6mer
200-216
0.010
5
6mer
141-149
0.009
8
XLOC_010706
hsa-miR-363-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021520
Biotype: transcript isomorph
Gene id: XLOC_010706
Gene Name: XLOC_010706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3491-3508
0.017
1
6mer
3148-3175
0.006
0
7mer
1538-1552
0.005
0
6mer
1725-1746
0.004
0
6mer
2303-2329
0.004
0
6mer
2917-2936
0.002
Not Conserved
RP4-714D9.5
hsa-miR-363-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564623
Biotype: sense_overlapping
Gene id: ENSG00000261254
Gene Name: RP4-714D9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4935-4958
0.015
2
8mer
3856-3863
0.015
1
6mer
4935-4950
0.007
1
RP1-309I22.2
hsa-miR-363-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7563-7587
0.008
2
7mer
11800-11824
0.007
1
7mer
11310-11326
0.003
0
8mer
12622-12648
0.002
0
6mer
19151-19169
0.002
1
6mer
23423-23437
0.002
3
6mer
986-1002
0.002
1
6mer
16068-16086
0.002
1
6mer
9466-9485
0.002
0
6mer
15336-15357
0.001
0
6mer
9974-9997
0.001
1
6mer
14001-14020
0.001
0
6mer
8534-8556
0.001
0
6mer
16461-16483
0.001
1
6mer
9276-9303
0.001
1
6mer
12499-12516
0.001
0
RP11-352B15.2
hsa-miR-363-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564385
Biotype: lincRNA
Gene id: ENSG00000260611
Gene Name: RP11-352B15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1079-1101
0.018
0
6mer
481-502
0.015
0
7mer
886-902
0.005
Not Conserved
LINC01194
hsa-miR-363-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505877
Biotype: lincRNA
Gene id: ENSG00000248131
Gene Name: LINC01194
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-208
0.019
1
6mer
317-328
0.009
1
6mer
1082-1086
0.008
1
BHLHE40-AS1
hsa-miR-363-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000615178
Biotype: antisense
Gene id: ENSG00000235831
Gene Name: BHLHE40-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-80
0.022
0
8mer
1664-1681
0.008
1
6mer
1833-1851
0.004
3
6mer
1111-1132
0.003
1
RP11-11N9.4
hsa-miR-363-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500843
Biotype: lincRNA
Gene id: ENSG00000247134
Gene Name: RP11-11N9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
150-167
0.021
1
7mer
441-468
0.016
1
RP11-693J15.5
hsa-miR-363-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-329
0.022
3
6mer
624-643
0.003
0
6mer
2352-2370
0.002
0
6mer
8193-8212
0.002
1
6mer
2815-2822
0.002
1
6mer
6416-6429
0.002
1
6mer
5771-5796
0.002
1
6mer
661-668
0.002
0
ESRG
hsa-miR-363-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_027122.1
Biotype: antisense
Gene id: NR_027122.1 (gene)
Gene Name: ESRG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-48
0.023
7
6mer
57-80
0.007
3
7mer
1339-1356
0.002
Not Conserved
6mer
2123-2129
0.002
Not Conserved
6mer
1670-1680
0.001
Not Conserved
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