LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
RP11-861L17.3
hsa-miR-363-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584226
Biotype: antisense
Gene id: ENSG00000264472
Gene Name: RP11-861L17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-90
0.035
1
6mer
316-342
0.006
1
XLOC_001612
hsa-miR-363-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002651
Biotype: transcript isomorph
Gene id: XLOC_001612
Gene Name: XLOC_001612
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
477-494
0.042
0
RP11-285M22.3
hsa-miR-363-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582507
Biotype: lincRNA
Gene id: ENSG00000264262
Gene Name: RP11-285M22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15-42
0.041
0
LINC01004
hsa-miR-363-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039981.2
Biotype: lincRNA
Gene id: NR_039981.2 (gene)
Gene Name: LINC01004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8593-8608
0.027
0
7mer
3979-4001
0.007
4
6mer
909-929
0.003
1
6mer
6720-6745
0.002
1
6mer
6134-6149
0.002
1
XLOC_009827
hsa-miR-363-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020510
Biotype: transcript isomorph
Gene id: XLOC_009827
Gene Name: XLOC_009827
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-50
0.028
9
6mer
214-223
0.007
4
6mer
177-202
0.006
2
RP11-1B20.1
hsa-miR-363-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424451
Biotype: antisense
Gene id: ENSG00000228625
Gene Name: RP11-1B20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
585-600
0.041
1
RP11-100M12.1
hsa-miR-363-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557025
Biotype: antisense
Gene id: ENSG00000258970
Gene Name: RP11-100M12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-38
0.041
3
RP11-861L17.3
hsa-miR-363-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579678
Biotype: antisense
Gene id: ENSG00000264472
Gene Name: RP11-861L17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-86
0.035
1
6mer
312-338
0.006
1
RP11-494M8.4
hsa-miR-363-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533634
Biotype: sense_overlapping
Gene id: ENSG00000254951
Gene Name: RP11-494M8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-17
0.028
2
7mer
256-269
0.012
1
DLX6-AS1
hsa-miR-363-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437331
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3698-3722
0.019
11
6mer
141-149
0.012
8
6mer
200-216
0.008
5
TUSC7
hsa-miR-363-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000477539
Biotype: antisense
Gene id: ENSG00000243197
Gene Name: TUSC7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-86
0.020
1
7mer
2385-2409
0.013
2
6mer
257-271
0.005
1
RP11-300M24.1
hsa-miR-363-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605741
Biotype: lincRNA
Gene id: ENSG00000227455
Gene Name: RP11-300M24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-350
0.031
0
7mer
2706-2725
0.004
1
6mer
523-541
0.004
0
XLOC_010670
hsa-miR-363-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022065
Biotype: transcript isomorph
Gene id: XLOC_010670
Gene Name: XLOC_010670
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
482-505
0.035
8
6mer
1676-1692
0.004
1
RP11-388K12.2
hsa-miR-363-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522598
Biotype: lincRNA
Gene id: ENSG00000254089
Gene Name: RP11-388K12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-206
0.039
5
RP11-362K2.2
hsa-miR-363-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546977
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1298-1318
0.011
4
7mer
1053-1069
0.008
0
8mer
250-265
0.008
0
6mer
1039-1046
0.007
1
8mer
698-715
0.006
0
XLOC_009080
hsa-miR-363-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019074
Biotype: transcript isomorph
Gene id: XLOC_009080
Gene Name: XLOC_009080
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3117-3139
0.033
1
6mer
851-871
0.003
1
6mer
663-675
0.003
0
RP11-11N9.4
hsa-miR-363-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520819
Biotype: lincRNA
Gene id: ENSG00000247134
Gene Name: RP11-11N9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
150-167
0.022
1
7mer
469-496
0.016
1
RP11-20D14.6
hsa-miR-363-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000514568
Biotype: lincRNA
Gene id: ENSG00000249790
Gene Name: RP11-20D14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1946-1953
0.032
0
6mer
31-38
0.006
Not Conserved
XLOC_011559
hsa-miR-363-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023765
Biotype: transcript isomorph
Gene id: XLOC_011559
Gene Name: XLOC_011559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-37
0.031
1
7mer
419-432
0.008
Not Conserved
CTD-2196P11.2
hsa-miR-363-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511734
Biotype: lincRNA
Gene id: ENSG00000251189
Gene Name: CTD-2196P11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-125
0.039
0
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