LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
GCSHP3
hsa-miR-363-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453039
Biotype: antisense
Gene id: ENSG00000231955
Gene Name: GCSHP3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1200-1223
0.046
0
CTD-2541J13.1
hsa-miR-363-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000562669
Biotype: lincRNA
Gene id: ENSG00000260578
Gene Name: CTD-2541J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
603-618
0.018
1
7mer
2195-2217
0.016
1
7mer
2789-2814
0.007
0
7mer
1265-1283
0.004
0
RP11-574O7.1
hsa-miR-363-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518927
Biotype: antisense
Gene id: ENSG00000254041
Gene Name: RP11-574O7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
847-866
0.026
14
6mer
689-712
0.009
12
6mer
127-152
0.006
2
6mer
97-109
0.005
3
XLOC_008826
hsa-miR-363-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018518
Biotype: transcript isomorph
Gene id: XLOC_008826
Gene Name: XLOC_008826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
558-577
0.025
1
6mer
291-302
0.016
1
7mer
3409-3430
0.005
0
RP11-278I4.2
hsa-miR-363-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518362
Biotype: antisense
Gene id: ENSG00000254278
Gene Name: RP11-278I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
404-427
0.019
0
6mer
976-988
0.012
9
7mer
828-839
0.008
4
6mer
646-665
0.008
4
RP11-508N22.12
hsa-miR-363-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608335
Biotype: lincRNA
Gene id: ENSG00000272983
Gene Name: RP11-508N22.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2497-2514
0.016
1
7mer
6726-6753
0.015
0
7mer
83-93
0.014
0
XLOC_002407
hsa-miR-363-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003450
Biotype: transcript isomorph
Gene id: XLOC_002407
Gene Name: XLOC_002407
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-186
0.045
7
AC068039.4
hsa-miR-363-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416361
Biotype: antisense
Gene id: ENSG00000228389
Gene Name: AC068039.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
432-448
0.020
0
7mer
510-537
0.015
0
6mer
631-656
0.011
0
AC017048.2
hsa-miR-363-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431455
Biotype: lincRNA
Gene id: ENSG00000236231
Gene Name: AC017048.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-186
0.045
7
XLOC_002775
hsa-miR-363-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006168
Biotype: transcript isomorph
Gene id: XLOC_002775
Gene Name: XLOC_002775
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
872-890
0.041
1
6mer
327-352
0.004
1
RP11-96P7.1
hsa-miR-363-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000512279
Biotype: lincRNA
Gene id: ENSG00000250514
Gene Name: RP11-96P7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1704-1723
0.027
1
7mer
2115-2139
0.009
1
6mer
1786-1810
0.008
4
LOC100132356
hsa-miR-363-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034127.1
Biotype: antisense
Gene id: NR_034127.1 (gene)
Gene Name: LOC100132356
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
483-500
0.020
1
7mer
220-233
0.018
1
8mer+wobble
960-977
0.004
0
LINC01002
hsa-miR-363-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000620229
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
887-908
0.023
1
7mer
505-519
0.020
1
CTD-3064H18.4
hsa-miR-363-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000316807
Biotype: antisense
Gene id: ENSG00000180458
Gene Name: CTD-3064H18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2006-2030
0.010
0
6mer
544-569
0.010
1
7mer
974-999
0.007
0
7mer
2213-2238
0.006
0
6mer
2368-2390
0.004
0
6mer
953-971
0.003
1
6mer
390-411
0.003
0
XLOC_001108
hsa-miR-363-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002525
Biotype: transcript isomorph
Gene id: XLOC_001108
Gene Name: XLOC_001108
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-340
0.043
3
NDUFA6-AS1
hsa-miR-363-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000617009
Biotype: antisense
Gene id: ENSG00000237037
Gene Name: NDUFA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-74
0.025
0
6mer
111-123
0.009
0
6mer
69-82
0.008
0
MIR663AHG
hsa-miR-363-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000597267
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
491-512
0.042
1
RP11-552M11.8
hsa-miR-363-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564771
Biotype: sense_overlapping
Gene id: ENSG00000260948
Gene Name: RP11-552M11.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
102-116
0.027
1
6mer
10-32
0.008
1
6mer
828-853
0.004
0
6mer
1289-1302
0.004
0
RP11-654D12.3
hsa-miR-363-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547094
Biotype: lincRNA
Gene id: ENSG00000257725
Gene Name: RP11-654D12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-51
0.028
9
6mer
303-312
0.007
4
6mer
266-291
0.007
2
AC023347.1
hsa-miR-363-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419223
Biotype: lincRNA
Gene id: ENSG00000235774
Gene Name: AC023347.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-215
0.030
3
6mer
397-412
0.011
3
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