LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
RP11-4O1.2
hsa-miR-363-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000563434
Biotype: sense_overlapping
Gene id: ENSG00000259953
Gene Name: RP11-4O1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4221-4239
0.011
1
6mer
204-228
0.008
2
6mer
279-305
0.006
1
PRKCQ-AS1
hsa-miR-363-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000607996
Biotype: lincRNA
Gene id: ENSG00000237943
Gene Name: PRKCQ-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
478-490
0.025
1
NDUFA6-AS1
hsa-miR-363-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000621190
Biotype: antisense
Gene id: ENSG00000237037
Gene Name: NDUFA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-74
0.016
0
6mer
111-123
0.005
0
6mer
69-82
0.004
0
RP11-69C17.3
hsa-miR-363-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421077
Biotype: lincRNA
Gene id: ENSG00000227912
Gene Name: RP11-69C17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1768-1788
0.016
1
7mer
735-758
0.005
1
6mer
1688-1702
0.003
0
AC005154.6
hsa-miR-363-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000584023
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
446-471
0.025
0
XLOC_009684
hsa-miR-363-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020354
Biotype: transcript isomorph
Gene id: XLOC_009684
Gene Name: XLOC_009684
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-259
0.013
3
7mer
266-282
0.012
3
NUTM2B-AS1
hsa-miR-363-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000430963
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-66
0.015
0
6mer
103-118
0.010
0
RP11-201M22.1
hsa-miR-363-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000581290
Biotype: lincRNA
Gene id: ENSG00000255332
Gene Name: RP11-201M22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-162
0.025
0
NCAM1-AS1
hsa-miR-363-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533638
Biotype: antisense
Gene id: ENSG00000227487
Gene Name: NCAM1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-430
0.025
0
RP11-757G1.6
hsa-miR-363-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2302-2326
0.009
0
6mer
1299-1318
0.008
0
6mer
1148-1172
0.007
0
MBNL1-AS1
hsa-miR-363-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608395
Biotype: antisense
Gene id: ENSG00000229619
Gene Name: MBNL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
600-627
0.010
3
6mer
306-321
0.006
2
6mer
128-143
0.005
0
6mer
2827-2837
0.003
1
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