LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
RP11-346C20.4
hsa-miR-363-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000606272
Biotype: lincRNA
Gene id: ENSG00000272250
Gene Name: RP11-346C20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
321-340
0.013
6
6mer
416-435
0.012
5
TRAF3IP2-AS1
hsa-miR-363-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000532353
Biotype: antisense
Gene id: ENSG00000231889
Gene Name: TRAF3IP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-544
0.025
2
RP11-544I20.2
hsa-miR-363-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555861
Biotype: antisense
Gene id: ENSG00000214770
Gene Name: RP11-544I20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
648-662
0.006
0
6mer
302-326
0.006
2
7mer
375-402
0.005
0
6mer
1407-1420
0.004
0
6mer
1021-1032
0.003
0
RP11-13A1.1
hsa-miR-363-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500381
Biotype: lincRNA
Gene id: ENSG00000246363
Gene Name: RP11-13A1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2656-2664
0.013
Not Conserved
6mer
49-70
0.007
2
6mer
684-701
0.003
2
6mer
637-655
0.002
1
DPH6-AS1
hsa-miR-363-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000501169
Biotype: lincRNA
Gene id: ENSG00000248079
Gene Name: DPH6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-806
0.014
2
7mer
510-535
0.011
5
RP4-794H19.1
hsa-miR-363-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423408
Biotype: lincRNA
Gene id: ENSG00000232453
Gene Name: RP4-794H19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
698-712
0.018
2
7mer
240-262
0.007
1
XLOC_007431
hsa-miR-363-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016036
Biotype: transcript isomorph
Gene id: XLOC_007431
Gene Name: XLOC_007431
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
366-392
0.017
1
6mer
1350-1362
0.008
2
PGM5P4-AS1
hsa-miR-363-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446595
Biotype: lincRNA
Gene id: ENSG00000231943
Gene Name: PGM5P4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
440-461
0.025
0
PWAR1
hsa-miR-363-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_022009.1
Biotype: lincRNA
Gene id: NR_022009.1 (gene)
Gene Name: PWAR1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
577-601
0.011
1
7mer
1009-1033
0.007
0
6mer
1833-1851
0.007
1
RP11-664D7.4
hsa-miR-363-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000584858
Biotype: antisense
Gene id: ENSG00000248801
Gene Name: RP11-664D7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
204-229
0.013
0
7mer
298-325
0.012
0
XLOC_005882
hsa-miR-363-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012335
Biotype: transcript isomorph
Gene id: XLOC_005882
Gene Name: XLOC_005882
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-69
0.015
1
6mer
55-69
0.010
1
CTC-513N18.7
hsa-miR-363-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595094
Biotype: lincRNA
Gene id: ENSG00000269110
Gene Name: CTC-513N18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
370-385
0.014
0
7mer
32-56
0.011
0
RP11-66B24.4
hsa-miR-363-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560351
Biotype: antisense
Gene id: ENSG00000259583
Gene Name: RP11-66B24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-252
0.011
1
7mer
957-972
0.008
1
7mer
3277-3294
0.004
Not Conserved
6mer
942-952
0.001
0
RP11-394I13.1
hsa-miR-363-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000563759
Biotype: lincRNA
Gene id: ENSG00000260868
Gene Name: RP11-394I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
178-195
0.015
9
6mer
1661-1671
0.006
3
6mer
82-102
0.004
0
RP11-4B14.3
hsa-miR-363-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000470817
Biotype: lincRNA
Gene id: ENSG00000239381
Gene Name: RP11-4B14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
372-391
0.025
15
TUNAR
hsa-miR-363-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000504119
Biotype: lincRNA
Gene id: ENSG00000250366
Gene Name: TUNAR
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2904-2927
0.022
8
6mer
1877-1897
0.003
1
AC003003.5
hsa-miR-363-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000611742
Biotype: sense_intronic
Gene id: ENSG00000188477
Gene Name: AC003003.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2376-2398
0.015
1
7mer
1215-1229
0.004
Not Conserved
6mer
1651-1675
0.003
2
6mer
1935-1960
0.002
1
6mer
1215-1237
0.001
0
RP4-665J23.1
hsa-miR-363-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606660
Biotype: retained_intron
Gene id: ENSG00000233593
Gene Name: RP4-665J23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2535-2554
0.016
14
6mer
691-708
0.007
7
6mer
1318-1344
0.002
2
6mer
1279-1291
0.001
1
XLOC_005344
hsa-miR-363-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011855
Biotype: transcript isomorph
Gene id: XLOC_005344
Gene Name: XLOC_005344
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
255-261
0.025
7
XLOC_006031
hsa-miR-363-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012987
Biotype: transcript isomorph
Gene id: XLOC_006031
Gene Name: XLOC_006031
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
115-139
0.018
1
6mer
544-566
0.007
0
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