LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
XLOC_012784
hsa-miR-363-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026436
Biotype: transcript isomorph
Gene id: XLOC_012784
Gene Name: XLOC_012784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2129-2147
0.045
0
7mer
1814-1840
0.020
0
RP11-206L10.3
hsa-miR-363-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4792-4806
0.032
0
7mer
3867-3881
0.016
0
6mer
4438-4449
0.004
Not Conserved
7mer
439-453
0.004
Not Conserved
6mer
4743-4756
0.003
Not Conserved
7mer
3021-3035
0.003
Not Conserved
7mer
1409-1423
0.002
Not Conserved
7mer
3296-3320
0.001
Not Conserved
AC125421.1
hsa-miR-363-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000455366
Biotype: lincRNA
Gene id: ENSG00000234721
Gene Name: AC125421.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2405-2430
0.056
6
7mer
1982-2005
0.007
0
RP11-379B18.5
hsa-miR-363-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599350
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-49
0.057
3
6mer
255-274
0.005
1
RP11-379B18.5
hsa-miR-363-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601985
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-49
0.057
3
6mer
362-381
0.005
1
RP11-255A11.2
hsa-miR-363-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000420315
Biotype: antisense
Gene id: ENSG00000228072
Gene Name: RP11-255A11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
212-235
0.062
0
CTB-33O18.3
hsa-miR-363-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519897
Biotype: antisense
Gene id: ENSG00000253955
Gene Name: CTB-33O18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1359-1381
0.061
1
XLOC_004323
hsa-miR-363-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009910
Biotype: transcript isomorph
Gene id: XLOC_004323
Gene Name: XLOC_004323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5448-5469
0.020
2
8mer
2700-2712
0.010
3
7mer
220-244
0.006
0
7mer
4680-4692
0.004
2
7mer
2828-2848
0.004
1
6mer
5497-5505
0.004
1
6mer
4923-4935
0.003
Not Conserved
7mer
3288-3306
0.003
Not Conserved
6mer
4009-4029
0.002
1
6mer
1777-1803
0.002
0
6mer
3105-3114
0.002
1
6mer
2965-2985
0.001
Not Conserved
AC006116.15
hsa-miR-363-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593258
Biotype: sense_intronic
Gene id: ENSG00000267429
Gene Name: AC006116.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-374
0.041
0
6mer
966-991
0.019
0
RP11-162I7.1
hsa-miR-363-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561386
Biotype: lincRNA
Gene id: ENSG00000259284
Gene Name: RP11-162I7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
869-892
0.047
6
6mer
64-77
0.007
2
6mer
64-87
0.005
1
RP11-92B11.3
hsa-miR-363-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578710
Biotype: antisense
Gene id: ENSG00000264673
Gene Name: RP11-92B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-144
0.038
0
6mer
81-94
0.021
0
XLOC_009222
hsa-miR-363-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6052-6066
0.036
0
6mer
5816-5836
0.017
0
6mer
4065-4092
0.007
0
MIR4534
hsa-miR-363-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
664-675
0.006
6
7mer
47161-47178
0.004
1
8mer
12472-12489
0.004
Not Conserved
7mer
8108-8130
0.004
1
7mer
1150-1164
0.004
1
6mer
54114-54127
0.003
1
8mer
42862-42870
0.003
0
6mer
54023-54049
0.003
1
7mer
11495-11509
0.002
1
7mer
2132-2154
0.002
0
6mer
53569-53582
0.002
1
7mer
16263-16277
0.002
1
6mer
11850-11868
0.002
1
7mer
7781-7795
0.002
1
6mer
49849-49872
0.002
Not Conserved
6mer
19464-19476
0.002
0
7mer
46675-46699
0.002
0
6mer
22531-22554
0.001
1
6mer
7425-7437
0.001
1
6mer
12788-12809
0.001
0
6mer
44124-44149
0.001
1
6mer
30802-30827
0.001
0
6mer
3519-3545
0.001
0
6mer
12554-12578
0.001
0
6mer
32893-32920
0.001
1
6mer
8158-8171
0.001
1
RP11-379B18.5
hsa-miR-363-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594843
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-30
0.058
3
XLOC_009034
hsa-miR-363-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019201
Biotype: transcript isomorph
Gene id: XLOC_009034
Gene Name: XLOC_009034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-231
0.058
3
AC093627.10
hsa-miR-363-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000484550
Biotype: lincRNA
Gene id: ENSG00000240859
Gene Name: AC093627.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-116
0.035
1
7mer
4538-4557
0.013
1
7mer
4577-4592
0.011
1
RP11-119D9.1
hsa-miR-363-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529069
Biotype: lincRNA
Gene id: ENSG00000251637
Gene Name: RP11-119D9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
555-572
0.058
3
STX18-AS1
hsa-miR-363-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610009
Biotype: antisense
Gene id: ENSG00000247708
Gene Name: STX18-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2313-2334
0.053
4
6mer
232-252
0.005
1
RNF219-AS1
hsa-miR-363-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607862
Biotype: antisense
Gene id: ENSG00000234377
Gene Name: RNF219-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4128-4146
0.020
10
7mer
278-302
0.011
2
6mer
4990-5011
0.006
6
7mer
2185-2198
0.004
1
6mer
5187-5207
0.004
4
7mer
5203-5221
0.003
2
6mer
1909-1920
0.003
4
6mer
3604-3623
0.003
6
6mer
3363-3383
0.003
5
6mer
2804-2825
0.001
0
XLOC_011277
hsa-miR-363-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023436
Biotype: transcript isomorph
Gene id: XLOC_011277
Gene Name: XLOC_011277
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
858-881
0.046
6
6mer
50-63
0.006
2
6mer
50-73
0.005
1
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