LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
RP11-171I2.1
hsa-miR-363-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590024
Biotype: antisense
Gene id: ENSG00000267784
Gene Name: RP11-171I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
282-297
0.010
2
6mer
3023-3039
0.007
3
6mer
485-502
0.005
3
6mer
2421-2440
0.004
6
ZBED3-AS1
hsa-miR-363-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514640
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1058-1074
0.017
1
7mer
334-346
0.010
0
AC005154.6
hsa-miR-363-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000584621
Biotype: antisense
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-97
0.007
Not Conserved
6mer
46-71
0.006
1
7mer
1218-1240
0.006
1
6mer
61-81
0.005
Not Conserved
6mer
1657-1680
0.003
0
AC004775.5
hsa-miR-363-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607389
Biotype: lincRNA
Gene id: ENSG00000272203
Gene Name: AC004775.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-40
0.026
1
LINC01470
hsa-miR-363-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506723
Biotype: lincRNA
Gene id: ENSG00000249484
Gene Name: LINC01470
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
779-805
0.008
0
7mer
848-864
0.007
1
7mer
1905-1919
0.006
0
6mer
220-231
0.005
0
RP11-449D8.1
hsa-miR-363-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577994
Biotype: lincRNA
Gene id: ENSG00000265485
Gene Name: RP11-449D8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2291-2297
0.022
1
6mer
1600-1624
0.005
5
RP11-659G9.3
hsa-miR-363-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527550
Biotype: sense_overlapping
Gene id: ENSG00000254698
Gene Name: RP11-659G9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-362
0.026
Not Conserved
SPTY2D1-AS1
hsa-miR-363-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000511927
Biotype: antisense
Gene id: ENSG00000247595
Gene Name: SPTY2D1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-110
0.026
0
ADAM20P1
hsa-miR-363-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000320746
Biotype: pseudogene
Gene id: ENSG00000259158
Gene Name: ADAM20P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-131
0.012
4
6mer
922-945
0.006
5
6mer
157-182
0.005
0
6mer
707-721
0.004
1
RP11-255P5.2
hsa-miR-363-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607072
Biotype: lincRNA
Gene id: ENSG00000272542
Gene Name: RP11-255P5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
822-844
0.014
7
7mer
364-376
0.012
4
AC006272.2
hsa-miR-363-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596964
Biotype: lincRNA
Gene id: ENSG00000268316
Gene Name: AC006272.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
508-516
0.026
1
RP11-192H23.6
hsa-miR-363-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579019
Biotype: antisense
Gene id: ENSG00000265287
Gene Name: RP11-192H23.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
785-801
0.009
0
6mer
269-289
0.009
5
6mer
376-393
0.006
1
6mer
485-498
0.003
1
AC006547.13
hsa-miR-363-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000600937
Biotype: antisense
Gene id: ENSG00000236540
Gene Name: AC006547.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
590-613
0.022
1
6mer
58-72
0.004
0
MUC19
hsa-miR-363-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1465-1480
0.005
2
7mer
19608-19622
0.005
Not Conserved
7mer
2829-2852
0.004
7
7mer
19336-19350
0.004
Not Conserved
6mer
3788-3813
0.004
8
6mer
5018-5031
0.003
4
6mer
7799-7817
0.001
1
6mer
3380-3404
0.001
Not Conserved
XLOC_009248
hsa-miR-363-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019969
Biotype: transcript isomorph
Gene id: XLOC_009248
Gene Name: XLOC_009248
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
495-522
0.016
0
6mer
1537-1554
0.010
1
SPTY2D1-AS1
hsa-miR-363-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_038360.1
Biotype: antisense
Gene id: NR_038360.1 (gene)
Gene Name: SPTY2D1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-95
0.026
0
XLOC_008573
hsa-miR-363-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018786
Biotype: transcript isomorph
Gene id: XLOC_008573
Gene Name: XLOC_008573
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
346-371
0.015
5
6mer
1478-1505
0.006
0
7mer
862-876
0.004
1
GABPB1-AS1
hsa-miR-363-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1190-1209
0.013
Not Conserved
6mer
632-650
0.006
4
6mer
6341-6357
0.002
1
7mer
3645-3659
0.002
0
6mer
8675-8696
0.001
0
RP11-669B22.1
hsa-miR-363-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517967
Biotype: sense_intronic
Gene id: ENSG00000253222
Gene Name: RP11-669B22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
357-380
0.013
1
8mer
338-362
0.012
1
LINC00960
hsa-miR-363-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463183
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1285-1307
0.026
1
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