LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
RP11-475A13.2
hsa-miR-363-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561236
Biotype: lincRNA
Gene id: ENSG00000259395
Gene Name: RP11-475A13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1749-1774
0.027
1
RP11-511B23.1
hsa-miR-363-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549914
Biotype: lincRNA
Gene id: ENSG00000257345
Gene Name: RP11-511B23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
691-716
0.015
1
6mer
470-484
0.007
2
6mer
53-71
0.005
3
LINC00977
hsa-miR-363-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000509893
Biotype: lincRNA
Gene id: ENSG00000250400
Gene Name: LINC00977
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1098-1109
0.027
9
KB-1592A4.14
hsa-miR-363-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000417463
Biotype: lincRNA
Gene id: ENSG00000234503
Gene Name: KB-1592A4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
41-63
0.027
1
LINC01021
hsa-miR-363-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510165
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
593-614
0.016
2
7mer
212-236
0.006
0
6mer
642-650
0.004
1
PGM5P4-AS1
hsa-miR-363-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416105
Biotype: lincRNA
Gene id: ENSG00000231943
Gene Name: PGM5P4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-186
0.027
0
CTD-2017D11.1
hsa-miR-363-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597683
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
640-654
0.012
1
6mer
690-703
0.008
1
7mer
640-662
0.007
0
RP11-1069G10.2
hsa-miR-363-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557900
Biotype: lincRNA
Gene id: ENSG00000259727
Gene Name: RP11-1069G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1034-1051
0.027
2
RP11-586K12.8
hsa-miR-363-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563937
Biotype: antisense
Gene id: ENSG00000260974
Gene Name: RP11-586K12.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
253-258
0.027
0
CTA-392E5.1
hsa-miR-363-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517368
Biotype: lincRNA
Gene id: ENSG00000253154
Gene Name: CTA-392E5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-324
0.018
3
6mer
215-219
0.009
2
XLOC_004924
hsa-miR-363-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11156-11179
0.021
2
6mer
5473-5483
0.002
0
6mer
3857-3870
0.002
3
6mer
6470-6483
0.002
0
RP11-767I20.1
hsa-miR-363-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550678
Biotype: lincRNA
Gene id: ENSG00000257259
Gene Name: RP11-767I20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
586-608
0.014
1
7mer
161-185
0.009
0
6mer
1463-1484
0.004
1
LINC01192
hsa-miR-363-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494897
Biotype: lincRNA
Gene id: ENSG00000241369
Gene Name: LINC01192
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-59
0.017
2
8mer
414-429
0.010
0
RP11-430C1.1
hsa-miR-363-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568279
Biotype: lincRNA
Gene id: ENSG00000261807
Gene Name: RP11-430C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1141-1167
0.005
0
7mer
3629-3645
0.005
1
6mer
6417-6430
0.004
0
6mer
1965-1987
0.003
5
6mer
4782-4808
0.003
2
7mer
1966-1993
0.002
5
6mer
939-947
0.002
0
6mer
2142-2151
0.002
0
6mer
1175-1196
0.001
Not Conserved
AC072062.1
hsa-miR-363-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607412
Biotype: antisense
Gene id: ENSG00000229267
Gene Name: AC072062.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1349-1373
0.022
0
6mer
436-461
0.004
3
AC007796.1
hsa-miR-363-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585336
Biotype: antisense
Gene id: ENSG00000267662
Gene Name: AC007796.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-167
0.026
11
XLOC_002258
hsa-miR-363-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004374
Biotype: transcript isomorph
Gene id: XLOC_002258
Gene Name: XLOC_002258
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2586-2590
0.021
1
6mer
487-507
0.006
0
LINC00960
hsa-miR-363-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_040005.1
Biotype: lincRNA
Gene id: NR_040005.1 (gene)
Gene Name: LINC00960
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1234-1256
0.026
1
AC099342.1
hsa-miR-363-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000446399
Biotype: lincRNA
Gene id: ENSG00000226097
Gene Name: AC099342.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
276-286
0.014
2
7mer
28-43
0.013
0
AC006547.13
hsa-miR-363-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609644
Biotype: antisense
Gene id: ENSG00000236540
Gene Name: AC006547.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
545-568
0.021
1
6mer
35-49
0.005
0
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