LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
AC078882.1
hsa-miR-363-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436132
Biotype: sense_overlapping
Gene id: ENSG00000244125
Gene Name: AC078882.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-341
0.023
3
6mer
388-406
0.004
1
XLOC_008461
hsa-miR-363-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017672
Biotype: transcript isomorph
Gene id: XLOC_008461
Gene Name: XLOC_008461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-142
0.020
1
6mer
1157-1170
0.004
1
6mer
910-927
0.003
0
MAGI2-AS3
hsa-miR-363-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452320
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8387-8407
0.006
1
7mer
6027-6051
0.005
2
6mer
5316-5338
0.005
7
7mer
7363-7377
0.003
0
7mer
3300-3327
0.003
0
6mer
1533-1540
0.002
1
6mer
1646-1670
0.002
1
6mer
3611-3634
0.002
1
6mer
7413-7426
0.001
0
XLOC_009546
hsa-miR-363-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019752
Biotype: transcript isomorph
Gene id: XLOC_009546
Gene Name: XLOC_009546
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
138-161
0.028
1
LINC01428
hsa-miR-363-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449581
Biotype: lincRNA
Gene id: ENSG00000228888
Gene Name: LINC01428
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-90
0.028
1
RP11-24M17.4
hsa-miR-363-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000623240
Biotype: TEC
Gene id: ENSG00000260288
Gene Name: RP11-24M17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1575-1579
0.028
1
AC098617.1
hsa-miR-363-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609952
Biotype: antisense
Gene id: ENSG00000233766
Gene Name: AC098617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-114
0.028
1
RP11-517I3.1
hsa-miR-363-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515808
Biotype: antisense
Gene id: ENSG00000250602
Gene Name: RP11-517I3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
367-379
0.028
4
RP11-148B18.4
hsa-miR-363-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414039
Biotype: lincRNA
Gene id: ENSG00000236098
Gene Name: RP11-148B18.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
385-408
0.028
1
RP1-269M15.3
hsa-miR-363-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000611791
Biotype: lincRNA
Gene id: ENSG00000233508
Gene Name: RP1-269M15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1942-1949
0.025
5
6mer
920-942
0.002
0
RP11-1020A11.2
hsa-miR-363-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602436
Biotype: antisense
Gene id: ENSG00000269982
Gene Name: RP11-1020A11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3343-3359
0.008
2
7mer
346-360
0.006
1
6mer
160-185
0.005
1
7mer
2739-2760
0.004
1
6mer
2246-2268
0.002
1
6mer
1767-1789
0.002
1
XLOC_009303
hsa-miR-363-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019502
Biotype: transcript isomorph
Gene id: XLOC_009303
Gene Name: XLOC_009303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
301-310
0.028
11
C9orf147
hsa-miR-363-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000463223
Biotype: antisense
Gene id: ENSG00000230185
Gene Name: C9orf147
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-48
0.024
1
6mer
375-399
0.004
0
AC009299.2
hsa-miR-363-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445372
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-142
0.028
2
CTD-2354A18.1
hsa-miR-363-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583942
Biotype: lincRNA
Gene id: ENSG00000261780
Gene Name: CTD-2354A18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
642-657
0.022
1
7mer
36-53
0.005
Not Conserved
RP11-678G15.2
hsa-miR-363-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579509
Biotype: antisense
Gene id: ENSG00000266767
Gene Name: RP11-678G15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
538-565
0.014
9
6mer
1026-1048
0.013
8
PCAT19
hsa-miR-363-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595063
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
350-367
0.019
1
6mer
250-257
0.009
0
CTA-390C10.10
hsa-miR-363-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609475
Biotype: sense_intronic
Gene id: ENSG00000272977
Gene Name: CTA-390C10.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3485-3505
0.014
1
7mer
14-28
0.008
0
6mer
3425-3433
0.006
1
RP11-90P5.5
hsa-miR-363-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000476186
Biotype: antisense
Gene id: ENSG00000240015
Gene Name: RP11-90P5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
151-172
0.013
0
7mer
219-233
0.008
0
7mer
219-241
0.006
Not Conserved
AC007422.1
hsa-miR-363-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000433065
Biotype: lincRNA
Gene id: ENSG00000224173
Gene Name: AC007422.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-465
0.018
0
6mer
974-993
0.009
1
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