LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
LOC101926935
hsa-miR-363-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3506-3519
0.026
0
6mer
1599-1616
0.001
Not Conserved
6mer
2636-2650
0.001
Not Conserved
RP4-671O14.6
hsa-miR-363-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-151
0.010
1
7mer
129-143
0.005
0
6mer
14057-14070
0.004
1
6mer
13258-13278
0.004
1
6mer
3449-3475
0.002
4
6mer
4909-4933
0.002
0
6mer
11594-11610
0.001
0
CTA-342B11.3
hsa-miR-363-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13050-13064
0.006
1
6mer
224-237
0.003
0
6mer
17742-17757
0.002
1
6mer
8238-8252
0.002
0
6mer
18979-18995
0.002
1
6mer
15250-15272
0.002
0
6mer
13325-13344
0.002
1
6mer
8775-8783
0.002
0
6mer
11615-11630
0.002
0
6mer
11091-11109
0.002
0
6mer
12153-12168
0.001
0
6mer
18682-18703
0.001
0
6mer
21297-21310
0.001
Not Conserved
6mer
14110-14131
0.001
1
RP11-669B22.1
hsa-miR-363-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523320
Biotype: sense_intronic
Gene id: ENSG00000253222
Gene Name: RP11-669B22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-509
0.016
1
8mer
467-491
0.012
1
LCMT1-AS2
hsa-miR-363-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5585-5595
0.028
1
RP11-274H2.5
hsa-miR-363-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567714
Biotype: sense_overlapping
Gene id: ENSG00000261051
Gene Name: RP11-274H2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
182-200
0.012
2
7mer
1616-1639
0.012
0
6mer
167-175
0.004
0
LINC01140
hsa-miR-363-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000461990
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2864-2878
0.015
6
6mer
1922-1946
0.005
8
7mer
1931-1952
0.004
10
6mer
1068-1082
0.003
3
6mer
1203-1214
0.001
0
XLOC_008106
hsa-miR-363-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017284
Biotype: transcript isomorph
Gene id: XLOC_008106
Gene Name: XLOC_008106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-72
0.015
0
6mer
1595-1621
0.014
1
RP11-389C8.3
hsa-miR-363-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607825
Biotype: lincRNA
Gene id: ENSG00000272365
Gene Name: RP11-389C8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
715-735
0.028
1
MGC27382
hsa-miR-363-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436742
Biotype: lincRNA
Gene id: ENSG00000237413
Gene Name: MGC27382
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1737-1758
0.028
0
RP11-585P4.6
hsa-miR-363-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617300
Biotype: sense_intronic
Gene id: ENSG00000273987
Gene Name: RP11-585P4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
423-442
0.009
3
6mer
609-635
0.008
1
6mer
147-173
0.006
1
6mer
142-155
0.005
Not Conserved
XLOC_000294
hsa-miR-363-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001027
Biotype: transcript isomorph
Gene id: XLOC_000294
Gene Name: XLOC_000294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9147-9156
0.013
1
7mer
3634-3648
0.004
1
7mer
4275-4298
0.004
1
6mer
3256-3274
0.002
3
7mer
7412-7426
0.002
1
7mer
3634-3656
0.002
0
XLOC_005847
hsa-miR-363-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012290
Biotype: transcript isomorph
Gene id: XLOC_005847
Gene Name: XLOC_005847
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-264
0.028
0
CTC-436P18.1
hsa-miR-363-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_109908.1
Biotype: antisense
Gene id: NR_109908.1 (gene)
Gene Name: CTC-436P18.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-571
0.028
0
DLX6-AS1
hsa-miR-363-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9039-9064
0.007
1
7mer
2935-2947
0.005
1
6mer
10586-10602
0.004
5
6mer
3907-3915
0.002
2
6mer
10527-10535
0.002
8
6mer
4429-4448
0.002
0
6mer
3688-3712
0.002
1
6mer
1716-1729
0.002
2
6mer
6800-6826
0.002
3
6mer
3301-3313
0.001
Not Conserved
PGM5P3-AS1
hsa-miR-363-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000622412
Biotype: lincRNA
Gene id: ENSG00000277631
Gene Name: PGM5P3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
256-277
0.028
1
RP1-46F2.3
hsa-miR-363-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548329
Biotype: lincRNA
Gene id: ENSG00000258240
Gene Name: RP1-46F2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
514-526
0.012
0
7mer
191-213
0.010
0
7mer
199-213
0.006
0
XLOC_011088
hsa-miR-363-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022379
Biotype: transcript isomorph
Gene id: XLOC_011088
Gene Name: XLOC_011088
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1081-1101
0.023
4
6mer
1486-1506
0.005
Not Conserved
PGM5P3-AS1
hsa-miR-363-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000613372
Biotype: lincRNA
Gene id: ENSG00000277631
Gene Name: PGM5P3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
279-300
0.028
1
LINC00461
hsa-miR-363-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509783
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
604-623
0.021
8
6mer
410-435
0.007
9
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