LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
AC012123.1
hsa-miR-363-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000426194
Biotype: antisense
Gene id: ENSG00000228835
Gene Name: AC012123.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
729-744
0.023
10
6mer
1269-1290
0.006
6
RP11-168K9.2
hsa-miR-363-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527317
Biotype: lincRNA
Gene id: ENSG00000255087
Gene Name: RP11-168K9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2273-2292
0.018
9
7mer
2268-2282
0.011
2
CTC-218H9.1
hsa-miR-363-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505261
Biotype: sense_intronic
Gene id: ENSG00000249605
Gene Name: CTC-218H9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-212
0.029
1
RP11-611O2.5
hsa-miR-363-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553141
Biotype: antisense
Gene id: ENSG00000257181
Gene Name: RP11-611O2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
709-725
0.029
0
XLOC_004800
hsa-miR-363-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010315
Biotype: transcript isomorph
Gene id: XLOC_004800
Gene Name: XLOC_004800
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
326-350
0.010
1
7mer
3834-3843
0.008
2
6mer
3903-3922
0.005
1
6mer
3041-3065
0.002
1
6mer
4221-4246
0.002
0
6mer
2523-2539
0.002
0
XLOC_009323
hsa-miR-363-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019114
Biotype: transcript isomorph
Gene id: XLOC_009323
Gene Name: XLOC_009323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3870-3889
0.018
9
7mer
3865-3879
0.011
2
SNHG10
hsa-miR-363-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_003138.3
Biotype: antisense
Gene id: NR_003138.3 (gene)
Gene Name: SNHG10
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
595-613
0.029
7
TSIX
hsa-miR-363-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6364-6380
0.007
1
7mer
12863-12887
0.004
Not Conserved
6mer
4458-4485
0.003
1
6mer
36135-36154
0.003
1
6mer
19624-19644
0.002
1
6mer
15642-15669
0.002
Not Conserved
6mer
4229-4243
0.002
1
6mer
17449-17468
0.002
1
6mer
31124-31137
0.002
1
6mer
15048-15066
0.002
Not Conserved
6mer
15281-15296
0.001
Not Conserved
6mer
1966-1982
0.001
Not Conserved
RP11-711D18.2
hsa-miR-363-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000557474
Biotype: lincRNA
Gene id: ENSG00000258435
Gene Name: RP11-711D18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-159
0.029
1
RP11-303E16.2
hsa-miR-363-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566639
Biotype: sense_intronic
Gene id: ENSG00000261061
Gene Name: RP11-303E16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
653-680
0.029
2
PRNCR1
hsa-miR-363-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_109833.1
Biotype: lincRNA
Gene id: NR_109833.1 (gene)
Gene Name: PRNCR1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11896-11915
0.010
1
6mer
12465-12483
0.004
1
6mer
1055-1065
0.003
1
6mer
11645-11665
0.003
1
6mer
10842-10853
0.002
1
6mer
8704-8708
0.002
1
6mer
10545-10563
0.002
1
6mer
3680-3695
0.001
1
6mer
5044-5067
0.001
1
6mer
6504-6529
0.001
0
6mer
10844-10869
0.001
1
CTD-3099C6.9
hsa-miR-363-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598322
Biotype: sense_intronic
Gene id: ENSG00000269825
Gene Name: CTD-3099C6.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2449-2475
0.010
0
7mer
2365-2388
0.009
1
6mer
2647-2656
0.006
1
8mer
1208-1220
0.003
0
6mer
1159-1163
0.001
0
XLOC_010829
hsa-miR-363-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022504
Biotype: transcript isomorph
Gene id: XLOC_010829
Gene Name: XLOC_010829
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3112-3118
0.020
1
7mer
3155-3166
0.007
1
6mer
2167-2186
0.002
0
RP11-379K22.2
hsa-miR-363-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558208
Biotype: antisense
Gene id: ENSG00000259175
Gene Name: RP11-379K22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
189-208
0.011
3
6mer
154-171
0.007
3
7mer
1310-1332
0.005
1
6mer
765-783
0.003
0
7mer
1637-1651
0.003
0
CTD-2147F2.2
hsa-miR-363-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558621
Biotype: lincRNA
Gene id: ENSG00000259664
Gene Name: CTD-2147F2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-66
0.015
1
6mer
269-288
0.007
1
6mer
39-65
0.007
1
FAM224A
hsa-miR-363-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000419557
Biotype: lincRNA
Gene id: ENSG00000233522
Gene Name: FAM224A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1394-1413
0.015
0
6mer
472-494
0.014
0
XLOC_011950
hsa-miR-363-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024662
Biotype: transcript isomorph
Gene id: XLOC_011950
Gene Name: XLOC_011950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-59
0.016
1
6mer
247-263
0.006
1
7mer
1808-1825
0.004
Not Conserved
6mer
1509-1524
0.003
2
C14orf64
hsa-miR-363-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556462
Biotype: lincRNA
Gene id: ENSG00000246223
Gene Name: C14orf64
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
649-660
0.024
2
6mer
1390-1415
0.004
1
IL12A-AS1
hsa-miR-363-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462431
Biotype: antisense
Gene id: ENSG00000244040
Gene Name: IL12A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
791-805
0.015
1
6mer
945-968
0.008
3
6mer
9-17
0.006
Not Conserved
SLC8A1-AS1
hsa-miR-363-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444629
Biotype: antisense
Gene id: ENSG00000227028
Gene Name: SLC8A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
548-569
0.024
3
6mer
578-601
0.005
3
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