LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-363-3p


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Gene
miRNA
Score
DIANA Links
CTB-83J4.2
hsa-miR-363-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596330
Biotype: lincRNA
Gene id: ENSG00000269271
Gene Name: CTB-83J4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
76-98
0.032
1
XLOC_012889
hsa-miR-363-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026570
Biotype: transcript isomorph
Gene id: XLOC_012889
Gene Name: XLOC_012889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3151-3177
0.015
4
7mer
3250-3269
0.012
4
7mer
1484-1502
0.006
3
RP11-100M12.2
hsa-miR-363-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553919
Biotype: sense_intronic
Gene id: ENSG00000259152
Gene Name: RP11-100M12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-176
0.032
1
CTA-292E10.9
hsa-miR-363-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1360-1378
0.007
Not Conserved
7mer
5697-5719
0.003
1
7mer
2699-2724
0.003
1
7mer
8672-8686
0.002
1
6mer
22768-22786
0.002
2
6mer
15173-15187
0.002
2
6mer
13755-13780
0.002
1
7mer
23162-23176
0.002
1
7mer
19103-19116
0.002
0
7mer
5513-5526
0.002
1
6mer
17130-17142
0.002
1
6mer
21863-21876
0.001
1
6mer
2874-2886
0.001
1
6mer
5563-5575
0.001
Not Conserved
RP11-471B22.3
hsa-miR-363-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000615251
Biotype: lincRNA
Gene id: ENSG00000275198
Gene Name: RP11-471B22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4464-4483
0.019
0
7mer
1561-1582
0.005
1
6mer
877-891
0.004
1
6mer
3388-3409
0.002
1
6mer
3202-3213
0.002
0
CTA-992D9.8
hsa-miR-363-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623947
Biotype: lincRNA
Gene id: ENSG00000280025
Gene Name: CTA-992D9.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3556-3579
0.014
1
7mer
624-632
0.011
4
6mer
3598-3621
0.004
3
6mer
1904-1908
0.003
1
XLOC_006568
hsa-miR-363-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012923
Biotype: transcript isomorph
Gene id: XLOC_006568
Gene Name: XLOC_006568
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
21-25
0.018
13
8mer
498-523
0.014
4
XLOC_009645
hsa-miR-363-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020306
Biotype: transcript isomorph
Gene id: XLOC_009645
Gene Name: XLOC_009645
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1724-1731
0.032
0
RP11-458K10.2
hsa-miR-363-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000470532
Biotype: lincRNA
Gene id: ENSG00000240973
Gene Name: RP11-458K10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-26
0.018
13
8mer
499-524
0.014
4
LINC00461
hsa-miR-363-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513026
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
209-228
0.022
8
6mer
15-40
0.010
9
RP11-274B21.9
hsa-miR-363-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000605007
Biotype: lincRNA
Gene id: ENSG00000271344
Gene Name: RP11-274B21.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-167
0.013
0
7mer
203-219
0.012
0
6mer
250-266
0.006
0
LINC00240
hsa-miR-363-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607607
Biotype: lincRNA
Gene id: ENSG00000224843
Gene Name: LINC00240
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5360-5379
0.011
1
7mer
5489-5494
0.008
Not Conserved
6mer
5264-5285
0.007
1
6mer
2832-2852
0.003
3
6mer
2006-2026
0.002
1
6mer
2947-2951
0.001
1
TFAP2A-AS1
hsa-miR-363-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000443546
Biotype: antisense
Gene id: ENSG00000229950
Gene Name: TFAP2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
846-859
0.018
1
6mer
865-889
0.009
3
6mer
37-63
0.004
3
RP11-728E14.2
hsa-miR-363-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582990
Biotype: lincRNA
Gene id: ENSG00000264023
Gene Name: RP11-728E14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
57-68
0.032
1
TSC22D1-AS1
hsa-miR-363-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000616360
Biotype: antisense
Gene id: ENSG00000278156
Gene Name: TSC22D1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-221
0.025
7
6mer
925-944
0.003
3
6mer
1764-1780
0.003
3
TSC22D1-AS1
hsa-miR-363-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_038381.1
Biotype: antisense
Gene id: NR_038381.1 (gene)
Gene Name: TSC22D1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-218
0.025
7
6mer
922-941
0.003
3
6mer
1761-1777
0.003
3
RP11-141C7.4
hsa-miR-363-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608379
Biotype: lincRNA
Gene id: ENSG00000272792
Gene Name: RP11-141C7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
429-454
0.031
1
RP1-71H24.6
hsa-miR-363-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614658
Biotype: lincRNA
Gene id: ENSG00000276343
Gene Name: RP1-71H24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-312
0.031
0
FAM182B
hsa-miR-363-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_027061.2
Biotype: sense
Gene id: NR_027061.2 (gene)
Gene Name: FAM182B
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-335
0.031
0
CTA-929C8.9
hsa-miR-363-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-363-3p
Sequence: aauugcacgguauccaucugua
MirBase ID: MIMAT0000707
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
137-161
0.010
1
7mer
24049-24057
0.006
1
6mer
23848-23873
0.003
1
6mer
5300-5309
0.003
6
6mer
20398-20421
0.002
0
6mer
12733-12745
0.002
1
6mer
5125-5152
0.002
1
6mer
7734-7756
0.002
1
6mer
15139-15152
0.001
Not Conserved
6mer
18153-18175
0.001
1
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