LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
AC084219.4
hsa-miR-34c-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590369
Biotype: antisense
Gene id: ENSG00000186019
Gene Name: AC084219.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
132-145
0.014
0
7mer
94-116
0.010
0
LINC00667
hsa-miR-34c-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581471
Biotype: lincRNA
Gene id: ENSG00000263753
Gene Name: LINC00667
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1826-1836
0.013
0
7mer
852-874
0.006
1
7mer
868-893
0.003
1
6mer
571-589
0.003
1
XLOC_013531
hsa-miR-34c-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028172
Biotype: transcript isomorph
Gene id: XLOC_013531
Gene Name: XLOC_013531
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
766-789
0.006
0
6mer
40-64
0.005
1
6mer
1333-1358
0.003
1
6mer
4335-4358
0.003
1
6mer
4497-4522
0.002
0
6mer
4174-4200
0.002
0
6mer
4014-4041
0.001
1
6mer
1497-1519
0.001
1
RP11-64B16.4
hsa-miR-34c-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535921
Biotype: antisense
Gene id: ENSG00000256609
Gene Name: RP11-64B16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-190
0.018
2
6mer
493-516
0.006
2
RP11-538I12.2
hsa-miR-34c-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569032
Biotype: antisense
Gene id: ENSG00000261063
Gene Name: RP11-538I12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-132
0.012
0
7mer
70-93
0.007
2
6mer
285-304
0.006
1
RP11-248G5.9
hsa-miR-34c-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613982
Biotype: antisense
Gene id: ENSG00000273523
Gene Name: RP11-248G5.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2891-2914
0.015
1
6mer
3114-3135
0.005
1
6mer
3156-3173
0.004
0
MTUS2-AS1
hsa-miR-34c-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_046378.1
Biotype: antisense
Gene id: NR_046378.1 (gene)
Gene Name: MTUS2-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1081-1095
0.015
3
8mer
1029-1047
0.009
0
RP3-467K16.7
hsa-miR-34c-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439788
Biotype: antisense
Gene id: ENSG00000236045
Gene Name: RP3-467K16.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
473-496
0.011
1
8mer
203-222
0.010
0
6mer
373-395
0.004
3
XLOC_000648
hsa-miR-34c-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001360
Biotype: transcript isomorph
Gene id: XLOC_000648
Gene Name: XLOC_000648
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1028-1049
0.015
1
6mer
225-243
0.006
0
6mer
347-371
0.004
0
LINC01289
hsa-miR-34c-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519550
Biotype: lincRNA
Gene id: ENSG00000253734
Gene Name: LINC01289
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3369-3395
0.013
2
9mer
1485-1508
0.010
1
6mer
2977-3001
0.003
0
RP11-383G10.5
hsa-miR-34c-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452599
Biotype: antisense
Gene id: ENSG00000225063
Gene Name: RP11-383G10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
643-667
0.014
8
7mer
498-517
0.011
2
RP5-907D15.4
hsa-miR-34c-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000598340
Biotype: lincRNA
Gene id: ENSG00000268941
Gene Name: RP5-907D15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
708-733
0.015
1
7mer
128-152
0.004
0
6mer
218-244
0.003
1
6mer
321-338
0.003
2
XLOC_008963
hsa-miR-34c-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018616
Biotype: transcript isomorph
Gene id: XLOC_008963
Gene Name: XLOC_008963
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
547-570
0.023
6
6mer
519-538
0.002
1
SHANK3
hsa-miR-34c-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000414786
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
7032-7052
0.008
6
7mer
5943-5956
0.007
9
7mer
769-784
0.005
0
6mer
6280-6298
0.003
7
7mer
5943-5962
0.001
4
RP11-421P23.1
hsa-miR-34c-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522604
Biotype: lincRNA
Gene id: ENSG00000253199
Gene Name: RP11-421P23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
642-664
0.010
1
7mer
938-955
0.008
1
6mer
1503-1526
0.004
0
6mer
100-116
0.003
1
RP11-541N10.3
hsa-miR-34c-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000568017
Biotype: sense_overlapping
Gene id: ENSG00000260461
Gene Name: RP11-541N10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1970-1986
0.013
1
6mer
2175-2196
0.005
0
6mer
1799-1821
0.003
0
6mer
1509-1527
0.003
0
6mer
1778-1795
0.002
2
AC068282.3
hsa-miR-34c-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000433673
Biotype: lincRNA
Gene id: ENSG00000236682
Gene Name: AC068282.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
366-386
0.006
0
6mer
112-136
0.005
2
8mer
1164-1184
0.005
3
7mer
390-408
0.002
0
6mer
941-963
0.002
1
6mer
1303-1320
0.001
1
6mer
1320-1339
0.001
1
6mer
1083-1096
0.001
1
6mer
1186-1200
0.001
1
6mer
1083-1100
0.001
1
AC006552.1
hsa-miR-34c-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508484
Biotype: lincRNA
Gene id: ENSG00000250456
Gene Name: AC006552.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2128-2139
0.011
2
7mer
139-151
0.006
0
6mer
384-407
0.005
0
6mer
1306-1330
0.003
0
XLOC_014106
hsa-miR-34c-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029162
Biotype: transcript isomorph
Gene id: XLOC_014106
Gene Name: XLOC_014106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
257-280
0.018
1
6mer
266-291
0.007
1
RP11-63B19.1
hsa-miR-34c-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427173
Biotype: lincRNA
Gene id: ENSG00000236720
Gene Name: RP11-63B19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-134
0.010
3
7mer
1462-1483
0.007
3
8mer
1344-1367
0.005
1
6mer
1015-1030
0.003
1
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