LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
CTD-2330K9.3
hsa-miR-34c-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000419183
Biotype: antisense
Gene id: ENSG00000228008
Gene Name: CTD-2330K9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
197-222
0.021
4
6mer
365-376
0.004
1
KB-1183D5.14
hsa-miR-34c-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000434730
Biotype: lincRNA
Gene id: ENSG00000237407
Gene Name: KB-1183D5.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
704-725
0.022
Not Conserved
6mer
140-161
0.003
Not Conserved
XLOC_011752
hsa-miR-34c-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024435
Biotype: transcript isomorph
Gene id: XLOC_011752
Gene Name: XLOC_011752
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
207-224
0.025
2
SLC7A11-AS1
hsa-miR-34c-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510767
Biotype: antisense
Gene id: ENSG00000250033
Gene Name: SLC7A11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4474-4495
0.014
3
7mer
4336-4359
0.007
2
6mer
2659-2675
0.004
8
RP11-430C1.1
hsa-miR-34c-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568279
Biotype: lincRNA
Gene id: ENSG00000261807
Gene Name: RP11-430C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5389-5409
0.009
1
7mer
2919-2943
0.006
2
6mer
121-134
0.005
0
7mer
3208-3227
0.003
1
6mer
1517-1539
0.002
1
6mer
3257-3280
0.001
Not Conserved
FLJ16171
hsa-miR-34c-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000377300
Biotype: lincRNA
Gene id: ENSG00000204754
Gene Name: FLJ16171
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1623-1647
0.017
2
6mer
1758-1784
0.005
1
6mer
622-647
0.003
0
CTD-2561J22.5
hsa-miR-34c-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599993
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
19-46
0.014
1
6mer
513-535
0.011
1
MGC45800
hsa-miR-34c-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505873
Biotype: antisense
Gene id: ENSG00000177822
Gene Name: MGC45800
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
810-833
0.021
4
6mer
732-753
0.004
4
RP11-50D9.3
hsa-miR-34c-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000565254
Biotype: antisense
Gene id: ENSG00000261668
Gene Name: RP11-50D9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
96-112
0.011
3
7mer
1284-1302
0.006
1
6mer
471-493
0.003
1
6mer
1066-1092
0.003
3
6mer
1761-1773
0.001
1
RP11-58K22.4
hsa-miR-34c-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532524
Biotype: antisense
Gene id: ENSG00000255092
Gene Name: RP11-58K22.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-32
0.014
3
6mer
499-524
0.005
2
6mer
85-104
0.003
1
6mer
214-239
0.003
0
AC007349.7
hsa-miR-34c-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439998
Biotype: antisense
Gene id: ENSG00000230831
Gene Name: AC007349.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-120
0.025
3
XLOC_001212
hsa-miR-34c-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001829
Biotype: transcript isomorph
Gene id: XLOC_001212
Gene Name: XLOC_001212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1153-1169
0.013
8
7mer
1023-1045
0.012
4
RP11-357H14.17
hsa-miR-34c-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433510
Biotype: lincRNA
Gene id: ENSG00000272763
Gene Name: RP11-357H14.17
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Colon Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
399-418
0.014
2
9mer
994-1020
0.011
1
LINC01471
hsa-miR-34c-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000461398
Biotype: lincRNA
Gene id: ENSG00000239921
Gene Name: LINC01471
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
707-729
0.007
1
8mer
2617-2642
0.006
1
6mer
2552-2567
0.003
0
6mer
956-976
0.002
1
6mer
2465-2486
0.002
1
6mer
1807-1834
0.002
1
6mer
660-685
0.001
Not Conserved
LINC01251
hsa-miR-34c-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000422764
Biotype: antisense
Gene id: ENSG00000233776
Gene Name: LINC01251
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-196
0.017
1
7mer
163-185
0.008
0
LINC00836
hsa-miR-34c-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_108068.1
Biotype: lincRNA
Gene id: NR_108068.1 (gene)
Gene Name: LINC00836
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1607-1627
0.022
0
6mer
80-100
0.003
0
RP13-631K18.5
hsa-miR-34c-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527997
Biotype: lincRNA
Gene id: ENSG00000255400
Gene Name: RP13-631K18.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
383-408
0.022
2
6mer
145-162
0.003
1
XLOC_003949
hsa-miR-34c-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007422
Biotype: transcript isomorph
Gene id: XLOC_003949
Gene Name: XLOC_003949
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2126-2137
0.011
2
7mer
137-149
0.006
0
6mer
382-405
0.005
0
6mer
1304-1328
0.003
0
LINC00667
hsa-miR-34c-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577439
Biotype: lincRNA
Gene id: ENSG00000263753
Gene Name: LINC00667
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3088-3106
0.019
0
6mer
1907-1926
0.002
1
6mer
1319-1342
0.002
1
6mer
2069-2094
0.002
0
AC005027.3
hsa-miR-34c-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416150
Biotype: sense_overlapping
Gene id: ENSG00000236310
Gene Name: AC005027.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-144
0.025
1
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