LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
XLOC_006898
hsa-miR-34c-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014543
Biotype: transcript isomorph
Gene id: XLOC_006898
Gene Name: XLOC_006898
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1973-1994
0.012
2
8mer
1694-1719
0.010
1
6mer
2697-2724
0.003
Not Conserved
TTC39A-AS1
hsa-miR-34c-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000568425
Biotype: antisense
Gene id: ENSG00000261664
Gene Name: TTC39A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
318-342
0.025
1
RP11-459E5.1
hsa-miR-34c-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521141
Biotype: antisense
Gene id: ENSG00000253125
Gene Name: RP11-459E5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
735-757
0.020
2
6mer
1299-1318
0.003
3
6mer
808-833
0.002
4
LINC00900
hsa-miR-34c-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_034148.1
Biotype: lincRNA
Gene id: NR_034148.1 (gene)
Gene Name: LINC00900
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2060-2077
0.023
3
6mer
1340-1364
0.002
1
XLOC_002612
hsa-miR-34c-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005982
Biotype: transcript isomorph
Gene id: XLOC_002612
Gene Name: XLOC_002612
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1944-1961
0.023
4
6mer
539-562
0.002
0
GNG12-AS1
hsa-miR-34c-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414904
Biotype: antisense
Gene id: ENSG00000232284
Gene Name: GNG12-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
18-39
0.025
1
XLOC_012587
hsa-miR-34c-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025781
Biotype: transcript isomorph
Gene id: XLOC_012587
Gene Name: XLOC_012587
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4216-4231
0.008
1
7mer
3803-3823
0.004
1
6mer
23-37
0.003
1
6mer
1017-1032
0.002
2
6mer
840-867
0.002
1
7mer
2626-2652
0.001
Not Conserved
6mer
3555-3563
0.001
1
6mer
2796-2814
0.001
1
6mer
1756-1766
0.001
1
6mer
1971-1996
0.001
0
XLOC_003146
hsa-miR-34c-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006523
Biotype: transcript isomorph
Gene id: XLOC_003146
Gene Name: XLOC_003146
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1417-1432
0.018
1
6mer
1782-1809
0.005
2
6mer
1287-1306
0.003
1
AC079630.2
hsa-miR-34c-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000457989
Biotype: lincRNA
Gene id: ENSG00000223914
Gene Name: AC079630.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
82-99
0.025
0
XLOC_008883
hsa-miR-34c-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018986
Biotype: transcript isomorph
Gene id: XLOC_008883
Gene Name: XLOC_008883
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
693-712
0.020
1
6mer
427-437
0.005
1
XLOC_005586
hsa-miR-34c-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012054
Biotype: transcript isomorph
Gene id: XLOC_005586
Gene Name: XLOC_005586
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-274
0.022
1
6mer
221-239
0.003
0
XLOC_011448
hsa-miR-34c-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
10186-10209
0.009
7
7mer
2949-2967
0.003
1
6mer
4273-4296
0.003
5
6mer
5506-5524
0.003
4
6mer
1152-1169
0.002
1
6mer
4208-4235
0.002
5
7mer
6201-6227
0.001
Not Conserved
6mer
2602-2624
0.001
0
6mer
2468-2490
0.001
0
XLOC_006045
hsa-miR-34c-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013412
Biotype: transcript isomorph
Gene id: XLOC_006045
Gene Name: XLOC_006045
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
336-355
0.016
1
7mer
56-80
0.009
1
THTPA
hsa-miR-34c-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556354
Biotype: antisense
Gene id: ENSG00000157306
Gene Name: THTPA
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
189-201
0.012
9
6mer
254-277
0.006
8
8mer
576-603
0.004
0
6mer
402-417
0.003
4
SAP30L-AS1
hsa-miR-34c-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000524264
Biotype: antisense
Gene id: ENSG00000245275
Gene Name: SAP30L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
626-650
0.016
0
6mer
124-148
0.006
3
6mer
899-926
0.002
0
6mer
481-508
0.002
1
LARS2-AS1
hsa-miR-34c-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000442534
Biotype: antisense
Gene id: ENSG00000232455
Gene Name: LARS2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-87
0.025
2
RP11-379P15.1
hsa-miR-34c-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499752
Biotype: lincRNA
Gene id: ENSG00000246820
Gene Name: RP11-379P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2695-2704
0.019
9
7mer
1382-1401
0.003
0
6mer
2472-2498
0.002
4
6mer
2101-2128
0.001
3
XLOC_005943
hsa-miR-34c-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012376
Biotype: transcript isomorph
Gene id: XLOC_005943
Gene Name: XLOC_005943
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
642-664
0.025
0
LOC101929657
hsa-miR-34c-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_110306.1
Biotype: antisense
Gene id: NR_110306.1 (gene)
Gene Name: LOC101929657
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2887-2910
0.015
1
6mer
3110-3131
0.005
1
6mer
3152-3169
0.004
0
RP11-416N2.4
hsa-miR-34c-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609691
Biotype: antisense
Gene id: ENSG00000273108
Gene Name: RP11-416N2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
589-607
0.022
3
6mer
86-99
0.003
0
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