LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000649
hsa-miR-34c-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001361
Biotype: transcript isomorph
Gene id: XLOC_000649
Gene Name: XLOC_000649
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
517-533
0.016
1
6mer
307-324
0.007
0
8mer+mismatch
786-810
0.003
Not Conserved
RP11-363G2.4
hsa-miR-34c-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000445646
Biotype: lincRNA
Gene id: ENSG00000229556
Gene Name: RP11-363G2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1395-1422
0.020
0
6mer
937-964
0.005
0
LINC00700
hsa-miR-34c-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000413603
Biotype: lincRNA
Gene id: ENSG00000234962
Gene Name: LINC00700
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-304
0.013
0
6mer
73-97
0.008
1
6mer
1061-1085
0.002
Not Conserved
6mer
759-776
0.002
Not Conserved
LINC01224
hsa-miR-34c-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596763
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
306-324
0.014
1
6mer
222-242
0.012
1
RP11-485G7.5
hsa-miR-34c-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000572913
Biotype: antisense
Gene id: ENSG00000263080
Gene Name: RP11-485G7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21-46
0.021
0
6mer
412-434
0.004
1
XLOC_007913
hsa-miR-34c-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017120
Biotype: transcript isomorph
Gene id: XLOC_007913
Gene Name: XLOC_007913
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-84
0.025
Not Conserved
RP11-57A19.2
hsa-miR-34c-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000501520
Biotype: lincRNA
Gene id: ENSG00000246465
Gene Name: RP11-57A19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1124-1140
0.006
0
6mer
2443-2466
0.003
1
6mer
2439-2455
0.003
1
6mer
2114-2140
0.002
0
6mer
440-464
0.002
0
6mer
1694-1711
0.002
0
6mer
600-627
0.002
Not Conserved
6mer
444-464
0.002
0
6mer
1994-2011
0.002
0
6mer
574-591
0.001
0
6mer
1998-2011
0.001
0
RP11-730K11.1
hsa-miR-34c-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501964
Biotype: antisense
Gene id: ENSG00000246790
Gene Name: RP11-730K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2858-2879
0.018
3
6mer
1820-1836
0.004
3
6mer
508-522
0.003
0
6mer
1802-1821
0.001
1
RP11-282O18.3
hsa-miR-34c-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000543217
Biotype: antisense
Gene id: ENSG00000235423
Gene Name: RP11-282O18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-491
0.025
5
RP11-152L20.3
hsa-miR-34c-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561674
Biotype: antisense
Gene id: ENSG00000260661
Gene Name: RP11-152L20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
817-843
0.025
Not Conserved
LINC00261
hsa-miR-34c-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000564492
Biotype: lincRNA
Gene id: ENSG00000259974
Gene Name: LINC00261
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
270-288
0.014
0
9mer
1437-1464
0.012
1
FOXG1-AS1
hsa-miR-34c-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000551395
Biotype: antisense
Gene id: ENSG00000257126
Gene Name: FOXG1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-282
0.025
1
XLOC_001560
hsa-miR-34c-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003759
Biotype: transcript isomorph
Gene id: XLOC_001560
Gene Name: XLOC_001560
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-181
0.025
1
XLOC_009474
hsa-miR-34c-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
112-135
0.007
5
6mer
4857-4870
0.006
9
7mer
2928-2953
0.006
3
6mer
3791-3814
0.004
8
6mer
1258-1282
0.003
3
STX18-AS1
hsa-miR-34c-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610009
Biotype: antisense
Gene id: ENSG00000247708
Gene Name: STX18-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1549-1568
0.018
3
6mer
359-378
0.002
1
6mer
849-871
0.002
2
6mer
552-571
0.001
1
6mer
1388-1409
0.001
0
XLOC_007035
hsa-miR-34c-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13316-13338
0.006
0
6mer
3225-3242
0.002
1
7mer
4825-4839
0.002
0
6mer
14982-14998
0.002
0
6mer
4372-4394
0.002
1
6mer
16504-16525
0.002
Not Conserved
6mer
9002-9028
0.002
1
6mer
8378-8400
0.002
1
6mer
776-794
0.001
0
6mer
11555-11577
0.001
1
6mer
1357-1378
0.001
0
6mer
6519-6541
0.001
1
6mer
6202-6215
0.001
1
6mer
11983-11996
0.001
1
6mer
6384-6411
0.001
0
RP11-347E10.1
hsa-miR-34c-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526703
Biotype: lincRNA
Gene id: ENSG00000254416
Gene Name: RP11-347E10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
183-203
0.025
0
XLOC_004292
hsa-miR-34c-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009873
Biotype: transcript isomorph
Gene id: XLOC_004292
Gene Name: XLOC_004292
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
210-231
0.020
1
6mer
467-490
0.006
4
TTTY10
hsa-miR-34c-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
20-42
0.017
0
6mer
849-873
0.008
0
RP11-960L18.1
hsa-miR-34c-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569731
Biotype: lincRNA
Gene id: ENSG00000261218
Gene Name: RP11-960L18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
726-749
0.025
0
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