LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
XLOC_005558
hsa-miR-34c-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012027
Biotype: transcript isomorph
Gene id: XLOC_005558
Gene Name: XLOC_005558
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-281
0.026
1
RP11-447M4.1
hsa-miR-34c-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000570082
Biotype: lincRNA
Gene id: ENSG00000260670
Gene Name: RP11-447M4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2920-2945
0.016
1
7mer
707-731
0.010
0
XLOC_007308
hsa-miR-34c-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015940
Biotype: transcript isomorph
Gene id: XLOC_007308
Gene Name: XLOC_007308
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
676-699
0.015
Not Conserved
7mer
164-190
0.009
4
6mer
747-759
0.002
0
XLOC_009608
hsa-miR-34c-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020155
Biotype: transcript isomorph
Gene id: XLOC_009608
Gene Name: XLOC_009608
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-439
0.026
2
XLOC_007119
hsa-miR-34c-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015038
Biotype: transcript isomorph
Gene id: XLOC_007119
Gene Name: XLOC_007119
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
434-455
0.017
4
6mer
404-422
0.004
0
6mer
1404-1426
0.003
1
6mer
379-399
0.002
0
RP4-799P18.3
hsa-miR-34c-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446433
Biotype: antisense
Gene id: ENSG00000236244
Gene Name: RP4-799P18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-211
0.022
1
6mer
215-239
0.004
0
RP11-74J13.8
hsa-miR-34c-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000619407
Biotype: antisense
Gene id: ENSG00000278390
Gene Name: RP11-74J13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
376-393
0.009
1
6mer
1859-1882
0.007
1
6mer
523-543
0.003
0
6mer
1438-1454
0.003
1
6mer
416-429
0.002
1
PCBP1-AS1
hsa-miR-34c-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416395
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
746-757
0.018
0
6mer
1959-1978
0.005
4
6mer
1603-1623
0.003
0
RP11-133K1.7
hsa-miR-34c-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568093
Biotype: sense_intronic
Gene id: ENSG00000260648
Gene Name: RP11-133K1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2797-2812
0.009
2
7mer
2909-2928
0.007
4
6mer
3691-3709
0.007
2
6mer
863-882
0.003
2
XLOC_013564
hsa-miR-34c-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028218
Biotype: transcript isomorph
Gene id: XLOC_013564
Gene Name: XLOC_013564
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-125
0.026
1
STEAP3-AS1
hsa-miR-34c-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454260
Biotype: antisense
Gene id: ENSG00000229867
Gene Name: STEAP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3076-3094
0.009
1
8mer
3092-3113
0.006
1
8mer
1312-1327
0.004
2
6mer
3024-3042
0.003
0
6mer
1955-1979
0.002
1
6mer
1021-1045
0.001
2
LMCD1-AS1
hsa-miR-34c-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420095
Biotype: antisense
Gene id: ENSG00000227110
Gene Name: LMCD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-266
0.022
0
6mer
170-183
0.004
1
XLOC_006862
hsa-miR-34c-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014788
Biotype: transcript isomorph
Gene id: XLOC_006862
Gene Name: XLOC_006862
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
637-658
0.026
1
AC114783.1
hsa-miR-34c-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454927
Biotype: lincRNA
Gene id: ENSG00000237524
Gene Name: AC114783.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-78
0.011
3
6mer
83-104
0.007
1
6mer
6-31
0.006
1
6mer
38-55
0.003
0
XLOC_002488
hsa-miR-34c-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004577
Biotype: transcript isomorph
Gene id: XLOC_002488
Gene Name: XLOC_002488
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2107-2127
0.018
3
6mer
758-770
0.005
4
6mer
1210-1234
0.002
1
RP11-327F22.5
hsa-miR-34c-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565327
Biotype: lincRNA
Gene id: ENSG00000261703
Gene Name: RP11-327F22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-176
0.026
3
RP11-206M11.7
hsa-miR-34c-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000489011
Biotype: antisense
Gene id: ENSG00000244468
Gene Name: RP11-206M11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
69-95
0.026
0
LINC00668
hsa-miR-34c-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578278
Biotype: lincRNA
Gene id: ENSG00000265933
Gene Name: LINC00668
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
118-139
0.016
2
8mer
550-573
0.008
1
6mer
522-535
0.002
Not Conserved
CTD-2336O2.1
hsa-miR-34c-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517959
Biotype: antisense
Gene id: ENSG00000253982
Gene Name: CTD-2336O2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
641-662
0.018
1
6mer
401-417
0.008
1
LINC00954
hsa-miR-34c-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449086
Biotype: lincRNA
Gene id: ENSG00000228784
Gene Name: LINC00954
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2888-2905
0.011
0
6mer
2608-2631
0.004
2
6mer
2019-2037
0.002
1
6mer
1312-1338
0.002
1
6mer
1038-1064
0.002
1
6mer
2678-2703
0.002
1
6mer
1617-1639
0.002
1
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