LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
RP11-383J24.6
hsa-miR-34c-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607837
Biotype: lincRNA
Gene id: ENSG00000271975
Gene Name: RP11-383J24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1750-1772
0.006
1
6mer
664-681
0.005
1
6mer
1585-1608
0.004
1
6mer
1660-1681
0.004
0
6mer
1564-1579
0.003
1
6mer
998-1021
0.003
1
6mer
529-546
0.001
Not Conserved
XLOC_010268
hsa-miR-34c-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021007
Biotype: transcript isomorph
Gene id: XLOC_010268
Gene Name: XLOC_010268
UCSC graphic: -
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
116-132
0.026
2
LOC388692
hsa-miR-34c-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027002.1
Biotype: lincRNA
Gene id: NR_027002.1 (gene)
Gene Name: LOC388692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2388-2404
0.005
0
6mer
2329-2355
0.004
3
7mer
2510-2523
0.003
0
6mer
1377-1390
0.002
1
6mer
9872-9893
0.002
1
6mer
2023-2049
0.002
1
7mer
6009-6034
0.002
0
6mer
10752-10776
0.002
1
6mer
3242-3259
0.002
1
6mer
2394-2420
0.001
1
LINC00595
hsa-miR-34c-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000476909
Biotype: lincRNA
Gene id: ENSG00000227136
Gene Name: LINC00595
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
651-671
0.021
10
6mer
112-138
0.002
Not Conserved
6mer
128-142
0.002
Not Conserved
CTD-2561J22.5
hsa-miR-34c-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594557
Biotype: retained_intron
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
334-350
0.009
1
6mer
1038-1059
0.004
1
6mer
1175-1202
0.003
1
6mer
3232-3256
0.003
1
6mer
1669-1691
0.003
1
6mer
2837-2863
0.002
1
6mer
2811-2824
0.001
1
6mer
1149-1171
0.001
0
LINC01505
hsa-miR-34c-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000411451
Biotype: lincRNA
Gene id: ENSG00000234229
Gene Name: LINC01505
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
247-260
0.022
10
6mer
515-528
0.004
2
RP11-574F21.2
hsa-miR-34c-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442130
Biotype: antisense
Gene id: ENSG00000228606
Gene Name: RP11-574F21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-201
0.026
7
RP4-695O20.1
hsa-miR-34c-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624818
Biotype: sense_intronic
Gene id: ENSG00000280384
Gene Name: RP4-695O20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
98-113
0.021
1
6mer
887-904
0.002
0
7mer
1042-1065
0.002
Not Conserved
6mer
1801-1822
0.001
Not Conserved
RP11-320G24.1
hsa-miR-34c-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000452690
Biotype: lincRNA
Gene id: ENSG00000236393
Gene Name: RP11-320G24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-470
0.021
4
6mer
2427-2449
0.002
1
6mer
521-536
0.002
0
6mer
1560-1586
0.001
2
RP11-276H1.3
hsa-miR-34c-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000312019
Biotype: antisense
Gene id: ENSG00000175604
Gene Name: RP11-276H1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1549-1570
0.007
0
7mer
1212-1235
0.007
1
6mer
1432-1450
0.003
2
6mer
755-768
0.003
1
6mer
999-1025
0.002
2
6mer
575-589
0.002
Not Conserved
6mer
556-570
0.002
1
RP11-757G1.6
hsa-miR-34c-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
144-165
0.015
0
6mer
991-1010
0.011
0
AC144450.1
hsa-miR-34c-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438247
Biotype: antisense
Gene id: ENSG00000228613
Gene Name: AC144450.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-92
0.014
0
7mer
402-418
0.012
1
LINC01125
hsa-miR-34c-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605017
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
210-232
0.014
1
6mer
68-90
0.007
0
6mer
398-424
0.006
0
RP11-264B14.2
hsa-miR-34c-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000593107
Biotype: antisense
Gene id: ENSG00000267449
Gene Name: RP11-264B14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
93-109
0.026
0
XLOC_005409
hsa-miR-34c-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011908
Biotype: transcript isomorph
Gene id: XLOC_005409
Gene Name: XLOC_005409
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-226
0.013
2
6mer
436-461
0.006
1
6mer
1229-1251
0.004
1
6mer
23-44
0.004
1
CTC-260E6.6
hsa-miR-34c-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585498
Biotype: antisense
Gene id: ENSG00000267383
Gene Name: CTC-260E6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
642-665
0.006
0
6mer
368-379
0.006
0
6mer
629-655
0.005
0
6mer
253-275
0.004
0
6mer
292-310
0.004
0
6mer
21-39
0.002
Not Conserved
XLOC_011150
hsa-miR-34c-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022896
Biotype: transcript isomorph
Gene id: XLOC_011150
Gene Name: XLOC_011150
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
30-48
0.020
1
6mer
190-209
0.006
0
HNF1A-AS1
hsa-miR-34c-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539163
Biotype: retained_intron
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-382
0.020
0
6mer
2190-2205
0.006
1
MIR663AHG
hsa-miR-34c-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000596111
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
10-34
0.023
2
6mer
286-308
0.002
Not Conserved
XLOC_007805
hsa-miR-34c-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016437
Biotype: transcript isomorph
Gene id: XLOC_007805
Gene Name: XLOC_007805
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1063-1080
0.017
Not Conserved
6mer
1153-1171
0.004
1
6mer
1135-1161
0.003
0
6mer
77-99
0.002
0
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