LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
AC100802.3
hsa-miR-34c-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519197
Biotype: antisense
Gene id: ENSG00000253775
Gene Name: AC100802.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
756-771
0.024
0
6mer
181-207
0.003
1
RP11-391M7.3
hsa-miR-34c-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000446888
Biotype: antisense
Gene id: ENSG00000231138
Gene Name: RP11-391M7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
112-135
0.018
1
6mer
737-762
0.003
1
6mer
484-510
0.003
1
6mer
644-668
0.002
Not Conserved
RP11-124K4.1
hsa-miR-34c-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561572
Biotype: antisense
Gene id: ENSG00000260338
Gene Name: RP11-124K4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
393-413
0.016
0
6mer
161-187
0.005
1
6mer
312-332
0.003
0
6mer
295-319
0.003
0
RP11-244N9.6
hsa-miR-34c-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000451595
Biotype: antisense
Gene id: ENSG00000228174
Gene Name: RP11-244N9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1158-1174
0.016
1
6mer
1111-1135
0.007
3
6mer
825-840
0.003
1
6mer
724-749
0.001
0
RP11-715G15.1
hsa-miR-34c-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419168
Biotype: lincRNA
Gene id: ENSG00000237468
Gene Name: RP11-715G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
657-679
0.019
0
6mer
1602-1627
0.005
2
6mer
851-876
0.003
1
KB-431C1.5
hsa-miR-34c-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606361
Biotype: antisense
Gene id: ENSG00000272037
Gene Name: KB-431C1.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1089-1107
0.016
0
7mer
641-658
0.007
1
6mer
395-408
0.003
0
RP11-705O24.1
hsa-miR-34c-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519990
Biotype: lincRNA
Gene id: ENSG00000254119
Gene Name: RP11-705O24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-54
0.027
3
XLOC_003703
hsa-miR-34c-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008260
Biotype: transcript isomorph
Gene id: XLOC_003703
Gene Name: XLOC_003703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-466
0.017
1
6mer
142-166
0.006
3
6mer
461-484
0.003
0
AF127936.3
hsa-miR-34c-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000455253
Biotype: lincRNA
Gene id: ENSG00000232884
Gene Name: AF127936.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-272
0.024
3
6mer
1520-1542
0.003
0
XLOC_002585
hsa-miR-34c-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006792
Biotype: transcript isomorph
Gene id: XLOC_002585
Gene Name: XLOC_002585
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5170-5189
0.014
Not Conserved
7mer
2885-2904
0.008
1
6mer
6204-6231
0.002
1
6mer
1906-1931
0.002
4
RP11-448G15.3
hsa-miR-34c-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000561486
Biotype: sense_overlapping
Gene id: ENSG00000261490
Gene Name: RP11-448G15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-247
0.010
1
7mer
2956-2979
0.008
0
6mer
2379-2401
0.002
0
6mer
968-990
0.002
0
6mer
1691-1716
0.001
1
6mer
1341-1364
0.001
1
6mer
1192-1217
0.001
1
SHANK3
hsa-miR-34c-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000262795
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6817-6837
0.008
6
7mer
5728-5741
0.008
9
7mer
542-557
0.006
0
6mer
6065-6083
0.003
7
7mer
5728-5747
0.001
4
XLOC_007556
hsa-miR-34c-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016692
Biotype: transcript isomorph
Gene id: XLOC_007556
Gene Name: XLOC_007556
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-43
0.026
1
NR2F1-AS1
hsa-miR-34c-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606188
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
483-496
0.026
1
WDR11-AS1
hsa-miR-34c-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000456120
Biotype: antisense
Gene id: ENSG00000227165
Gene Name: WDR11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1252-1270
0.011
2
6mer
307-333
0.006
3
6mer
262-283
0.004
2
6mer
266-289
0.003
3
6mer
701-715
0.002
1
AC074289.1
hsa-miR-34c-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438115
Biotype: antisense
Gene id: ENSG00000225889
Gene Name: AC074289.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-270
0.026
1
XLOC_011272
hsa-miR-34c-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023429
Biotype: transcript isomorph
Gene id: XLOC_011272
Gene Name: XLOC_011272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
210-227
0.026
1
XLOC_001931
hsa-miR-34c-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004095
Biotype: transcript isomorph
Gene id: XLOC_001931
Gene Name: XLOC_001931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
57-78
0.026
1
RP11-800A3.7
hsa-miR-34c-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000546324
Biotype: antisense
Gene id: ENSG00000257038
Gene Name: RP11-800A3.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-27
0.019
3
7mer
70-92
0.007
1
RP11-1082L8.4
hsa-miR-34c-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000533516
Biotype: lincRNA
Gene id: ENSG00000255491
Gene Name: RP11-1082L8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
686-710
0.015
7
6mer
350-377
0.007
6
6mer
99-119
0.004
0
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