LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
RP11-320G24.1
hsa-miR-34c-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000447570
Biotype: lincRNA
Gene id: ENSG00000236393
Gene Name: RP11-320G24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-421
0.024
4
6mer
472-487
0.003
0
RP11-266K4.13
hsa-miR-34c-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
287-302
0.027
1
AC007879.1
hsa-miR-34c-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435643
Biotype: lincRNA
Gene id: ENSG00000224342
Gene Name: AC007879.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
354-374
0.019
1
6mer
210-231
0.008
3
RP11-508N22.12
hsa-miR-34c-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608335
Biotype: lincRNA
Gene id: ENSG00000272983
Gene Name: RP11-508N22.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6631-6645
0.010
0
7mer
1092-1116
0.006
0
6mer
5267-5284
0.006
2
6mer
2129-2146
0.003
1
6mer
3829-3850
0.003
0
CTD-2636A23.2
hsa-miR-34c-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000565748
Biotype: antisense
Gene id: ENSG00000261604
Gene Name: CTD-2636A23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
617-635
0.015
1
6mer
1266-1291
0.005
2
6mer
1606-1623
0.005
1
6mer
821-831
0.003
0
LINC01272
hsa-miR-34c-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000425497
Biotype: lincRNA
Gene id: ENSG00000224397
Gene Name: LINC01272
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
733-752
0.006
1
7mer
438-453
0.006
2
7mer
994-1012
0.005
1
6mer
428-445
0.004
3
6mer
1261-1276
0.002
2
6mer
766-785
0.001
2
6mer
1261-1280
0.001
2
ZNF561-AS1
hsa-miR-34c-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585797
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
400-411
0.008
0
6mer
1374-1399
0.007
0
6mer
1337-1359
0.007
0
6mer
1424-1445
0.005
Not Conserved
RP11-727A23.10
hsa-miR-34c-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530045
Biotype: antisense
Gene id: ENSG00000255234
Gene Name: RP11-727A23.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1715-1736
0.012
0
6mer
2584-2608
0.005
0
6mer
2370-2386
0.004
0
6mer
458-472
0.004
1
6mer
959-983
0.002
Not Conserved
RP11-279F6.1
hsa-miR-34c-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558781
Biotype: lincRNA
Gene id: ENSG00000245750
Gene Name: RP11-279F6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-239
0.027
1
LOC283070
hsa-miR-34c-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027322.1
Biotype: sense
Gene id: NR_027322.1 (gene)
Gene Name: LOC283070
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2299-2317
0.023
11
7mer
438-463
0.004
1
RP11-3P17.5
hsa-miR-34c-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602890
Biotype: lincRNA
Gene id: ENSG00000269888
Gene Name: RP11-3P17.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
139-155
0.027
0
LINC00523
hsa-miR-34c-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000360899
Biotype: lincRNA
Gene id: ENSG00000196273
Gene Name: LINC00523
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
606-628
0.018
1
6mer
1571-1597
0.005
2
6mer
377-399
0.002
0
6mer
1306-1322
0.001
1
LINC01006
hsa-miR-34c-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440711
Biotype: lincRNA
Gene id: ENSG00000182648
Gene Name: LINC01006
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-194
0.024
1
6mer
163-181
0.003
0
RP4-569M23.2
hsa-miR-34c-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000413818
Biotype: antisense
Gene id: ENSG00000231119
Gene Name: RP4-569M23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1671-1695
0.017
4
6mer
1714-1730
0.005
4
6mer
217-237
0.002
1
6mer
1186-1209
0.002
1
XLOC_010769
hsa-miR-34c-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022430
Biotype: transcript isomorph
Gene id: XLOC_010769
Gene Name: XLOC_010769
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2345-2360
0.018
1
6mer
1849-1868
0.009
1
RP11-569G13.2
hsa-miR-34c-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000432783
Biotype: lincRNA
Gene id: ENSG00000237212
Gene Name: RP11-569G13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
404-423
0.020
0
6mer
1496-1520
0.004
1
6mer
1083-1110
0.002
1
F10-AS1
hsa-miR-34c-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000424635
Biotype: antisense
Gene id: ENSG00000231882
Gene Name: F10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
321-343
0.017
0
6mer
347-373
0.009
0
RP11-17G12.2
hsa-miR-34c-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540410
Biotype: antisense
Gene id: ENSG00000256897
Gene Name: RP11-17G12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-23
0.013
1
6mer
435-457
0.007
2
6mer
80-101
0.007
1
ASB16-AS1
hsa-miR-34c-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591166
Biotype: antisense
Gene id: ENSG00000267080
Gene Name: ASB16-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-269
0.018
1
6mer
53-66
0.003
1
6mer
463-485
0.003
0
6mer
47-66
0.003
1
XLOC_005818
hsa-miR-34c-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011550
Biotype: transcript isomorph
Gene id: XLOC_005818
Gene Name: XLOC_005818
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1180-1198
0.015
1
6mer
30-54
0.006
2
6mer
1365-1382
0.004
1
6mer
808-828
0.002
0
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