LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
XLOC_012312
hsa-miR-34c-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025497
Biotype: transcript isomorph
Gene id: XLOC_012312
Gene Name: XLOC_012312
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
199-215
0.027
1
FLNB-AS1
hsa-miR-34c-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488720
Biotype: antisense
Gene id: ENSG00000244161
Gene Name: FLNB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3400-3424
0.011
2
8mer
1375-1399
0.007
0
6mer
362-380
0.005
5
8mer
2415-2440
0.002
1
6mer
2498-2517
0.002
5
6mer
2320-2341
0.001
1
RP6-91H8.5
hsa-miR-34c-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000602396
Biotype: lincRNA
Gene id: ENSG00000269945
Gene Name: RP6-91H8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-50
0.008
0
7mer
791-813
0.004
Not Conserved
6mer
2958-2983
0.004
3
8mer
1084-1107
0.003
0
6mer
3331-3353
0.003
0
6mer
2513-2533
0.002
1
7mer
1510-1531
0.002
0
8mer
1528-1541
0.001
1
6mer
879-901
0.001
0
LINC01002
hsa-miR-34c-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000614996
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1160-1182
0.008
1
7mer
380-406
0.006
1
6mer
189-205
0.006
1
6mer
316-339
0.004
1
6mer
157-184
0.004
0
RP11-230C9.4
hsa-miR-34c-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000604082
Biotype: lincRNA
Gene id: ENSG00000271265
Gene Name: RP11-230C9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
110-126
0.027
4
DDC-AS1
hsa-miR-34c-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454521
Biotype: antisense
Gene id: ENSG00000226122
Gene Name: DDC-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1721-1739
0.015
Not Conserved
8mer
971-991
0.005
1
6mer
1696-1717
0.004
0
6mer
1394-1410
0.003
0
AC106876.2
hsa-miR-34c-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000409905
Biotype: antisense
Gene id: ENSG00000222001
Gene Name: AC106876.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
455-466
0.027
1
RP11-752D24.2
hsa-miR-34c-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510351
Biotype: antisense
Gene id: ENSG00000248115
Gene Name: RP11-752D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
24-51
0.022
1
7mer
2083-2104
0.003
0
6mer
1581-1604
0.003
1
LOC729683
hsa-miR-34c-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_046273.1
Biotype: antisense
Gene id: NR_046273.1 (gene)
Gene Name: LOC729683
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-226
0.012
1
7mer
1822-1836
0.010
1
6mer
2193-2211
0.004
1
6mer
1115-1140
0.001
0
RP11-890B15.2
hsa-miR-34c-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533812
Biotype: lincRNA
Gene id: ENSG00000254842
Gene Name: RP11-890B15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-77
0.022
0
6mer
1755-1777
0.005
1
CTD-2201E18.3
hsa-miR-34c-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503152
Biotype: sense_overlapping
Gene id: ENSG00000177738
Gene Name: CTD-2201E18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
559-581
0.027
1
LINC01138
hsa-miR-34c-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027468.2
Biotype: lincRNA
Gene id: NR_027468.2 (gene)
Gene Name: LINC01138
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
818-838
0.015
8
6mer
1000-1015
0.006
5
6mer
385-399
0.002
0
6mer
264-284
0.002
Not Conserved
6mer
290-317
0.001
Not Conserved
CTB-107G13.1
hsa-miR-34c-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000422488
Biotype: antisense
Gene id: ENSG00000234715
Gene Name: CTB-107G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-184
0.027
2
XLOC_006566
hsa-miR-34c-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013929
Biotype: transcript isomorph
Gene id: XLOC_006566
Gene Name: XLOC_006566
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5-32
0.027
1
XLOC_011441
hsa-miR-34c-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023640
Biotype: transcript isomorph
Gene id: XLOC_011441
Gene Name: XLOC_011441
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-102
0.027
2
XLOC_011056
hsa-miR-34c-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023122
Biotype: transcript isomorph
Gene id: XLOC_011056
Gene Name: XLOC_011056
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-457
0.021
2
6mer
982-1004
0.004
1
6mer
1008-1035
0.003
1
XLOC_009955
hsa-miR-34c-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020656
Biotype: transcript isomorph
Gene id: XLOC_009955
Gene Name: XLOC_009955
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
431-440
0.010
1
6mer
277-299
0.007
0
6mer
18-38
0.006
0
6mer
746-760
0.003
0
6mer
871-891
0.001
Not Conserved
RP5-968P14.2
hsa-miR-34c-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569378
Biotype: antisense
Gene id: ENSG00000260063
Gene Name: RP5-968P14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1810-1832
0.012
8
6mer
1777-1799
0.007
7
6mer
91-116
0.005
0
6mer
1203-1213
0.004
5
TPTEP1
hsa-miR-34c-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000400593
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1080-1102
0.016
1
6mer
1168-1194
0.004
0
6mer
1206-1220
0.004
0
6mer
1087-1110
0.003
0
XLOC_011927
hsa-miR-34c-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024636
Biotype: transcript isomorph
Gene id: XLOC_011927
Gene Name: XLOC_011927
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
572-586
0.027
Not Conserved
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