LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
XLOC_011620
hsa-miR-34c-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024310
Biotype: transcript isomorph
Gene id: XLOC_011620
Gene Name: XLOC_011620
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
617-638
0.024
Not Conserved
6mer
488-505
0.001
Not Conserved
6mer
351-373
0.001
Not Conserved
6mer
321-347
0.001
Not Conserved
AC106876.2
hsa-miR-34c-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000463534
Biotype: retained_intron
Gene id: ENSG00000222001
Gene Name: AC106876.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-358
0.028
1
RP11-344E13.3
hsa-miR-34c-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582583
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1523-1538
0.012
Not Conserved
9mer
1089-1102
0.007
0
6mer
1394-1411
0.006
0
6mer
1115-1139
0.002
Not Conserved
RP11-867G23.10
hsa-miR-34c-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526186
Biotype: antisense
Gene id: ENSG00000254510
Gene Name: RP11-867G23.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-158
0.020
1
7mer
121-145
0.008
0
RP11-398J5.1
hsa-miR-34c-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583980
Biotype: antisense
Gene id: ENSG00000266711
Gene Name: RP11-398J5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
353-378
0.018
1
7mer
372-390
0.005
0
6mer
214-239
0.004
1
LINC00621
hsa-miR-34c-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000577004
Biotype: lincRNA
Gene id: ENSG00000262619
Gene Name: LINC00621
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1015-1033
0.028
0
LINC00664
hsa-miR-34c-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599078
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
410-435
0.006
Not Conserved
6mer
281-300
0.005
0
6mer
1576-1600
0.003
1
6mer
2019-2043
0.003
1
6mer
1357-1383
0.003
1
6mer
991-1009
0.002
0
7mer
1054-1080
0.002
0
6mer
370-396
0.001
Not Conserved
6mer
1125-1149
0.001
0
RP3-412A9.17
hsa-miR-34c-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2133-2157
0.005
0
6mer
5529-5550
0.003
5
7mer
4975-4991
0.002
1
6mer
14347-14369
0.002
4
6mer
12400-12412
0.002
1
6mer
15703-15725
0.002
1
6mer
11725-11745
0.002
0
6mer
16152-16178
0.001
Not Conserved
6mer
12055-12072
0.001
0
6mer
16020-16040
0.001
0
6mer
3006-3029
0.001
1
6mer
3146-3172
0.001
1
6mer
13783-13808
0.001
1
6mer
15988-16014
0.001
Not Conserved
6mer
10556-10579
0.001
0
6mer
9420-9442
0.001
0
6mer
13820-13834
0.001
2
6mer
9389-9416
0.000
0
CTD-2600O9.2
hsa-miR-34c-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000613495
Biotype: antisense
Gene id: ENSG00000276166
Gene Name: CTD-2600O9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-151
0.013
0
8mer
334-356
0.008
0
6mer
553-567
0.003
1
7mer
197-220
0.003
1
CECR7
hsa-miR-34c-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609596
Biotype: lincRNA
Gene id: ENSG00000237438
Gene Name: CECR7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1068-1090
0.010
0
6mer
2032-2058
0.006
0
6mer
440-467
0.006
1
6mer
1931-1942
0.003
0
6mer
689-711
0.003
0
XLOC_012614
hsa-miR-34c-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026245
Biotype: transcript isomorph
Gene id: XLOC_012614
Gene Name: XLOC_012614
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
564-582
0.006
4
6mer
835-857
0.006
3
6mer
462-472
0.005
3
6mer
388-410
0.005
1
6mer
668-688
0.004
3
6mer
536-557
0.002
1
ASB16-AS1
hsa-miR-34c-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588785
Biotype: antisense
Gene id: ENSG00000267080
Gene Name: ASB16-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-223
0.017
1
6mer
7-20
0.004
1
6mer
417-439
0.004
0
6mer
538-554
0.003
0
LINC01251
hsa-miR-34c-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444956
Biotype: antisense
Gene id: ENSG00000233776
Gene Name: LINC01251
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-196
0.016
1
7mer
163-185
0.008
0
6mer
288-308
0.003
0
RP11-314D7.1
hsa-miR-34c-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551135
Biotype: lincRNA
Gene id: ENSG00000258294
Gene Name: RP11-314D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
86-102
0.017
10
6mer
885-903
0.005
0
6mer
801-823
0.003
1
6mer
519-538
0.003
0
FENDRR
hsa-miR-34c-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000595886
Biotype: lincRNA
Gene id: ENSG00000268388
Gene Name: FENDRR
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
330-346
0.012
1
7mer
2275-2300
0.011
2
6mer
845-867
0.003
1
6mer
1426-1445
0.002
1
LINC01411
hsa-miR-34c-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510234
Biotype: lincRNA
Gene id: ENSG00000249306
Gene Name: LINC01411
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
729-748
0.022
1
6mer
206-226
0.005
1
XLOC_009021
hsa-miR-34c-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019195
Biotype: transcript isomorph
Gene id: XLOC_009021
Gene Name: XLOC_009021
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-85
0.024
1
6mer
531-554
0.002
0
6mer
2064-2085
0.002
0
XLOC_001809
hsa-miR-34c-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003987
Biotype: transcript isomorph
Gene id: XLOC_001809
Gene Name: XLOC_001809
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2556-2574
0.009
1
6mer
2342-2358
0.005
2
6mer
199-219
0.004
1
6mer
2945-2960
0.003
1
6mer
337-350
0.003
1
6mer
337-354
0.002
1
6mer
1431-1453
0.001
Not Conserved
C21orf90
hsa-miR-34c-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026548.1
Biotype: antisense
Gene id: NR_026548.1 (gene)
Gene Name: C21orf90
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
685-708
0.027
1
RP11-480A16.1
hsa-miR-34c-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000570130
Biotype: lincRNA
Gene id: ENSG00000260261
Gene Name: RP11-480A16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3210-3236
0.012
1
9mer
3256-3279
0.010
0
6mer
1037-1062
0.002
1
6mer
2516-2535
0.002
0
6mer
1865-1883
0.001
0
6mer
944-966
0.001
Not Conserved
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