LncBase Experimental v.2
Help
Download
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-34c-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
MIR663AHG
hsa-miR-34c-5p
0.470
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000427348
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
20:26209177-26209205
exon
HITS-CLIP
DIRECT
LncBasev2
20:26209177-26209205
exon
HITS-CLIP
DIRECT
LncBasev2
20:26209177-26209205
exon
HITS-CLIP
DIRECT
LncBasev2
20:26209177-26209205
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:26209177-26209205
exon
HITS-CLIP
DIRECT
LncBasev2
20:26209177-26209205
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:26209177-26209205
exon
HITS-CLIP
DIRECT
LncBasev2
MMP24-AS1
hsa-miR-34c-5p
0.539
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000435366
Biotype: antisense
Gene id: ENSG00000126005
Gene Name: MMP24-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
20:35276722-35276754
exon
HITS-CLIP
DIRECT
LncBasev2
MMP24-AS1
hsa-miR-34c-5p
0.479
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000424358
Biotype: antisense
Gene id: ENSG00000126005
Gene Name: MMP24-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
20:35277349-35277377
exon
HITS-CLIP
DIRECT
LncBasev2
MTND4P12
hsa-miR-34c-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000498999
Biotype: processed_pseudogene
Gene id: ENSG00000247627
Gene Name: MTND4P12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
EF3DAGO2
IP
Tested Cell Line: EF3DAGO2
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:134927051-134927079
exon
PAR-CLIP
DIRECT
LncBasev2
MZF1-AS1
hsa-miR-34c-5p
0.444
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000600534
Biotype: antisense
Gene id: ENSG00000267858
Gene Name: MZF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
19:58559234-58559262
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-34c-5p
0.851
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65424479-65424507
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430771-65430799
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437731-65437759
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427125-65427153
exon
HITS-CLIP
DIRECT
LncBasev2
11:65433125-65433153
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430771-65430799
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437731-65437759
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436599-65436627
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:65424479-65424507
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430183-65430211
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443939-65443967
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428765-65428793
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427125-65427153
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430273-65430301
exon
HITS-CLIP
DIRECT
LncBasev2
11:65437731-65437759
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427240-65427268
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424479-65424507
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430771-65430799
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443568-65443596
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424479-65424507
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427240-65427268
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430183-65430211
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427125-65427153
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424479-65424507
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427240-65427268
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436184-65436212
exon
HITS-CLIP
DIRECT
LncBasev2
11:65428765-65428793
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424479-65424507
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443568-65443596
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427125-65427153
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430273-65430301
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443724-65443752
exon
HITS-CLIP
DIRECT
LncBasev2
11:65438931-65438959
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427240-65427268
exon
HITS-CLIP
DIRECT
LncBasev2
11:65430273-65430301
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-34c-5p
0.407
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
11:65424479-65424507
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424479-65424507
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424479-65424507
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424479-65424507
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424479-65424507
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423025-65423053
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65424479-65424507
exon
HITS-CLIP
DIRECT
LncBasev2
PCBP1-AS1
hsa-miR-34c-5p
0.435
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000601494
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
2:70050717-70050745
exon
HITS-CLIP
DIRECT
LncBasev2
PLEKHM1P
hsa-miR-34c-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000582986
Biotype: processed_transcript
Gene id: ENSG00000214176
Gene Name: PLEKHM1P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
17:64783105-64783133
exon
HITS-CLIP
DIRECT
LncBasev2
PVRIG2P
hsa-miR-34c-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000435460
Biotype: transcribed_unprocessed_pseudogene
Gene id: ENSG00000235333
Gene Name: PVRIG2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
7:100353508-100353536
exon
HITS-CLIP
DIRECT
LncBasev2
RAB4B-EGLN2
hsa-miR-34c-5p
0.525
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: NR_037791.1
Biotype: sense
Gene id: NR_037791.1 (gene)
Gene Name: RAB4B-EGLN2
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
19:40800415-40800443
exon
HITS-CLIP
DIRECT
LncBasev2
19:40800415-40800443
exon
HITS-CLIP
DIRECT
LncBasev2
19:40807955-40807983
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-1055B8.4
hsa-miR-34c-5p
0.456
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000571724
Biotype: lincRNA
Gene id: ENSG00000262877
Gene Name: RP11-1055B8.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
17:81389023-81389051
exon
HITS-CLIP
DIRECT
LncBasev2
17:81388206-81388234
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-119K6.6
hsa-miR-34c-5p
0.407
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000432120
Biotype: sense_overlapping
Gene id: ENSG00000244332
Gene Name: RP11-119K6.6
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:94610808-94610840
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-278C7.1
hsa-miR-34c-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000550917
Biotype: processed_pseudogene
Gene id: ENSG00000257511
Gene Name: RP11-278C7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:32726932-32726960
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-285G1.14
hsa-miR-34c-5p
0.486
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000609898
Biotype: sense_intronic
Gene id: ENSG00000273363
Gene Name: RP11-285G1.14
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
10:44959134-44959162
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-2C24.4
hsa-miR-34c-5p
0.362
mTTBlnPmP
IP

Gene Details
Chromosome: 16
Transcript: ENST00000483578
Biotype: processed_transcript
Gene id: ENSG00000260899
Gene Name: RP11-2C24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
16:30748452-30748480
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-361F15.2
hsa-miR-34c-5p
0.473
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000443556
Biotype: lincRNA
Gene id: ENSG00000225135
Gene Name: RP11-361F15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
LCLBACD3
IP
Tested Cell Line: LCLBACD3
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:147389212-147389240
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-380L11.4
hsa-miR-34c-5p
0.493
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000602952
Biotype: antisense
Gene id: ENSG00000270028
Gene Name: RP11-380L11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
EF3DAGO2
IP
Tested Cell Line: EF3DAGO2
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:123925746-123925774
exon
PAR-CLIP
DIRECT
LncBasev2
RP11-420A23.1
hsa-miR-34c-5p
0.401
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000511497
Biotype: lincRNA
Gene id: ENSG00000251432
Gene Name: RP11-420A23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
4:128483420-128483448
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-46A10.5
hsa-miR-34c-5p
0.455
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000358073
Biotype: antisense
Gene id: ENSG00000243155
Gene Name: RP11-46A10.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
1:180976292-180976320
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept