LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
TPTEP1
hsa-miR-34c-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000383140
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
620-642
0.018
1
6mer
746-760
0.003
0
6mer
708-734
0.003
0
6mer
627-650
0.003
0
NAMA
hsa-miR-34c-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000604258
Biotype: lincRNA
Gene id: ENSG00000271086
Gene Name: NAMA
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1897-1907
0.017
5
6mer
688-706
0.005
7
6mer
321-339
0.005
3
6mer
769-787
0.001
1
LOC286367
hsa-miR-34c-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_024011.1
Biotype: sense
Gene id: NR_024011.1 (gene)
Gene Name: LOC286367
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1451-1478
0.015
1
6mer
3212-3228
0.004
2
6mer
895-920
0.003
1
6mer
641-663
0.003
0
8mer
1872-1888
0.003
0
6mer
1883-1894
0.000
1
EAF1-AS1
hsa-miR-34c-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595975
Biotype: antisense
Gene id: ENSG00000249786
Gene Name: EAF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
491-509
0.028
10
CTA-796E4.4
hsa-miR-34c-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000434510
Biotype: antisense
Gene id: ENSG00000229770
Gene Name: CTA-796E4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-72
0.028
4
RP11-15H20.6
hsa-miR-34c-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593324
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
525-537
0.018
0
6mer
164-186
0.006
0
6mer
190-217
0.004
0
RP11-203L2.4
hsa-miR-34c-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000442103
Biotype: antisense
Gene id: ENSG00000236733
Gene Name: RP11-203L2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-209
0.025
0
6mer
239-257
0.003
0
LINC00964
hsa-miR-34c-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027321.1
Biotype: lincRNA
Gene id: NR_027321.1 (gene)
Gene Name: LINC00964
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3511-3526
0.008
1
6mer
3471-3494
0.006
1
6mer
3348-3366
0.005
3
6mer
1033-1054
0.004
5
6mer
721-740
0.004
3
6mer
1196-1214
0.002
2
LINC01460
hsa-miR-34c-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000379677
Biotype: lincRNA
Gene id: ENSG00000205334
Gene Name: LINC01460
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2327-2353
0.009
7
6mer
2112-2135
0.006
5
6mer
68-92
0.005
2
6mer
2076-2097
0.004
7
6mer
1888-1914
0.002
1
6mer
1879-1892
0.002
4
XLOC_002198
hsa-miR-34c-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004327
Biotype: transcript isomorph
Gene id: XLOC_002198
Gene Name: XLOC_002198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-93
0.024
1
8mer
1037-1057
0.004
0
RP11-267L5.1
hsa-miR-34c-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519248
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
382-407
0.028
Not Conserved
XLOC_013272
hsa-miR-34c-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027233
Biotype: transcript isomorph
Gene id: XLOC_013272
Gene Name: XLOC_013272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
319-328
0.013
0
6mer
817-843
0.008
0
6mer
1689-1715
0.003
Not Conserved
6mer
1542-1561
0.002
Not Conserved
6mer
1113-1135
0.002
Not Conserved
6mer
971-997
0.001
Not Conserved
ERVH48-1
hsa-miR-34c-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
417-436
0.018
0
6mer
770-790
0.009
0
AL592528.1
hsa-miR-34c-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000380008
Biotype: antisense
Gene id: ENSG00000205424
Gene Name: AL592528.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-248
0.018
0
7mer
1901-1918
0.003
0
6mer
3240-3260
0.003
0
6mer
879-897
0.002
0
6mer
2212-2236
0.001
0
6mer
1439-1452
0.001
0
RP11-1143G9.5
hsa-miR-34c-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613291
Biotype: lincRNA
Gene id: ENSG00000274979
Gene Name: RP11-1143G9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1755-1767
0.016
1
6mer
2483-2502
0.003
1
6mer
593-613
0.003
1
6mer
3985-4006
0.002
1
6mer
619-644
0.002
0
6mer
3517-3540
0.002
1
RP11-114M1.1
hsa-miR-34c-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423466
Biotype: lincRNA
Gene id: ENSG00000228561
Gene Name: RP11-114M1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-132
0.028
1
CTD-2311B13.5
hsa-miR-34c-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000613990
Biotype: antisense
Gene id: ENSG00000275563
Gene Name: CTD-2311B13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
538-557
0.017
2
7mer
1825-1845
0.007
0
6mer
1403-1423
0.003
0
ETV5-AS1
hsa-miR-34c-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000453370
Biotype: antisense
Gene id: ENSG00000234197
Gene Name: ETV5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-530
0.028
1
XLOC_012839
hsa-miR-34c-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026518
Biotype: transcript isomorph
Gene id: XLOC_012839
Gene Name: XLOC_012839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6185-6207
0.010
0
7mer
6112-6131
0.010
2
7mer
1373-1394
0.006
1
6mer
5591-5615
0.001
Not Conserved
6mer
5047-5065
0.001
0
RP11-1103G16.1
hsa-miR-34c-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000550118
Biotype: antisense
Gene id: ENSG00000257636
Gene Name: RP11-1103G16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
539-557
0.025
Not Conserved
6mer
410-436
0.003
0
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