LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
XLOC_008764
hsa-miR-34c-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018899
Biotype: transcript isomorph
Gene id: XLOC_008764
Gene Name: XLOC_008764
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Liver Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-135
0.025
0
6mer
1880-1904
0.004
1
LINC00879
hsa-miR-34c-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466089
Biotype: lincRNA
Gene id: ENSG00000239589
Gene Name: LINC00879
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-195
0.028
1
XLOC_010150
hsa-miR-34c-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020868
Biotype: transcript isomorph
Gene id: XLOC_010150
Gene Name: XLOC_010150
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
307-332
0.028
0
RP11-553P9.2
hsa-miR-34c-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509713
Biotype: lincRNA
Gene id: ENSG00000248434
Gene Name: RP11-553P9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-266
0.028
0
XLOC_003453
hsa-miR-34c-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007983
Biotype: transcript isomorph
Gene id: XLOC_003453
Gene Name: XLOC_003453
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
902-922
0.013
1
7mer
534-552
0.010
5
6mer
488-513
0.006
2
XLOC_012784
hsa-miR-34c-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026436
Biotype: transcript isomorph
Gene id: XLOC_012784
Gene Name: XLOC_012784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2304-2322
0.019
0
6mer
1722-1747
0.009
0
RP11-92K15.1
hsa-miR-34c-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522494
Biotype: antisense
Gene id: ENSG00000254205
Gene Name: RP11-92K15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-327
0.022
1
6mer
73-99
0.006
2
RP11-813I20.2
hsa-miR-34c-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554458
Biotype: lincRNA
Gene id: ENSG00000258784
Gene Name: RP11-813I20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-137
0.025
2
6mer
184-196
0.003
0
LINC01120
hsa-miR-34c-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_036499.1
Biotype: lincRNA
Gene id: NR_036499.1 (gene)
Gene Name: LINC01120
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2346-2370
0.013
0
7mer
294-317
0.011
0
6mer
1731-1748
0.002
0
6mer
2341-2355
0.002
0
TSNAX-DISC1
hsa-miR-34c-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028393.1
Biotype: sense
Gene id: NR_028393.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5787-5803
0.007
1
8mer
7141-7163
0.006
1
7mer
2628-2643
0.005
5
7mer
1720-1742
0.002
6
6mer
5200-5215
0.002
4
6mer
6262-6287
0.002
0
7mer
6484-6506
0.002
0
6mer
1947-1966
0.001
2
RP4-614O4.12
hsa-miR-34c-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000594413
Biotype: lincRNA
Gene id: ENSG00000269202
Gene Name: RP4-614O4.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1300-1321
0.014
0
6mer
1459-1480
0.005
0
6mer
1433-1449
0.005
0
6mer
611-633
0.004
0
U47924.32
hsa-miR-34c-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000610699
Biotype: lincRNA
Gene id: ENSG00000275703
Gene Name: U47924.32
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-364
0.028
1
HNF1A-AS1
hsa-miR-34c-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000433033
Biotype: antisense
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-90
0.022
0
6mer
483-498
0.003
1
6mer
384-406
0.003
1
XLOC_003406
hsa-miR-34c-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006773
Biotype: transcript isomorph
Gene id: XLOC_003406
Gene Name: XLOC_003406
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3224-3247
0.010
1
6mer
1007-1032
0.004
1
7mer
3178-3204
0.003
1
6mer
4839-4862
0.003
0
6mer
2485-2502
0.003
1
6mer
911-929
0.003
0
6mer
1835-1853
0.002
0
LINC00272
hsa-miR-34c-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000612603
Biotype: lincRNA
Gene id: ENSG00000203729
Gene Name: LINC00272
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-102
0.028
2
AC093323.3
hsa-miR-34c-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000444232
Biotype: lincRNA
Gene id: ENSG00000170846
Gene Name: AC093323.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
66-92
0.025
0
6mer
1273-1289
0.003
1
PRICKLE2-AS1
hsa-miR-34c-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482609
Biotype: antisense
Gene id: ENSG00000241111
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-258
0.015
1
7mer
6105-6124
0.004
Not Conserved
6mer
817-842
0.004
3
7mer
5721-5739
0.002
0
6mer
1396-1413
0.002
4
6mer
5725-5750
0.001
1
XLOC_011484
hsa-miR-34c-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023685
Biotype: transcript isomorph
Gene id: XLOC_011484
Gene Name: XLOC_011484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
363-383
0.016
0
6mer
2581-2595
0.009
0
6mer
3316-3330
0.004
Not Conserved
RP11-553P9.2
hsa-miR-34c-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514526
Biotype: lincRNA
Gene id: ENSG00000248434
Gene Name: RP11-553P9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
636-662
0.028
0
CTB-187M2.3
hsa-miR-34c-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582654
Biotype: lincRNA
Gene id: ENSG00000263726
Gene Name: CTB-187M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-251
0.028
1
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