LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
CTC-297N7.9
hsa-miR-34c-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579529
Biotype: lincRNA
Gene id: ENSG00000264016
Gene Name: CTC-297N7.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
277-297
0.025
2
6mer
205-225
0.004
0
XLOC_012416
hsa-miR-34c-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025586
Biotype: transcript isomorph
Gene id: XLOC_012416
Gene Name: XLOC_012416
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
531-557
0.022
1
6mer
769-789
0.007
1
LINC01504
hsa-miR-34c-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436054
Biotype: lincRNA
Gene id: ENSG00000225434
Gene Name: LINC01504
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1955-1974
0.019
2
6mer
67-81
0.004
1
6mer
431-447
0.003
1
6mer
1569-1590
0.002
2
RP4-756G23.5
hsa-miR-34c-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000441316
Biotype: antisense
Gene id: ENSG00000235513
Gene Name: RP4-756G23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
795-818
0.012
6
7mer
672-690
0.012
7
6mer
1621-1643
0.002
2
6mer
2449-2472
0.002
0
C20orf203
hsa-miR-34c-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000608990
Biotype: lincRNA
Gene id: ENSG00000198547
Gene Name: C20orf203
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4340-4361
0.006
1
6mer
452-467
0.004
1
6mer
361-383
0.003
2
6mer
4613-4635
0.003
0
6mer
409-431
0.003
2
6mer
3885-3894
0.002
4
6mer
4454-4473
0.002
1
6mer
4005-4017
0.002
2
6mer
1291-1305
0.001
Not Conserved
6mer
1776-1796
0.001
0
6mer
2995-3004
0.001
0
6mer
3881-3894
0.001
2
LINC00094
hsa-miR-34c-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603928
Biotype: antisense
Gene id: ENSG00000235106
Gene Name: LINC00094
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4344-4368
0.017
Not Conserved
7mer
4878-4895
0.006
0
6mer
2732-2755
0.001
1
6mer
3621-3641
0.001
1
6mer
2189-2209
0.001
Not Conserved
6mer
3670-3691
0.001
1
6mer
2045-2071
0.001
1
6mer
3000-3022
0.001
1
6mer
2080-2097
0.000
1
XLOC_000008
hsa-miR-34c-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001909
Biotype: transcript isomorph
Gene id: XLOC_000008
Gene Name: XLOC_000008
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1278-1302
0.019
0
9mer
191-215
0.007
Not Conserved
7mer
649-674
0.003
Not Conserved
RP11-436K8.1
hsa-miR-34c-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423403
Biotype: lincRNA
Gene id: ENSG00000231252
Gene Name: RP11-436K8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2216-2229
0.014
3
7mer
914-940
0.004
0
6mer
2138-2148
0.003
0
6mer
407-420
0.003
1
6mer
1893-1919
0.002
Not Conserved
6mer
272-296
0.002
0
AC005355.2
hsa-miR-34c-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515627
Biotype: lincRNA
Gene id: ENSG00000251169
Gene Name: AC005355.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
861-879
0.021
2
6mer
37-52
0.004
3
6mer
85-103
0.003
1
XLOC_011157
hsa-miR-34c-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023287
Biotype: transcript isomorph
Gene id: XLOC_011157
Gene Name: XLOC_011157
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1642-1658
0.009
0
6mer
845-866
0.004
0
6mer
521-538
0.004
0
6mer
1149-1164
0.003
0
6mer
909-929
0.003
0
6mer
521-544
0.002
0
6mer
2245-2268
0.001
Not Conserved
6mer
2293-2315
0.001
Not Conserved
TNK2-AS1
hsa-miR-34c-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000458180
Biotype: antisense
Gene id: ENSG00000224614
Gene Name: TNK2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1589-1604
0.020
0
6mer
65-85
0.003
1
6mer
235-261
0.003
2
6mer
170-193
0.003
0
STL
hsa-miR-34c-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_026876.1
Biotype: antisense
Gene id: NR_026876.1 (gene)
Gene Name: STL
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
268-292
0.011
0
8mer
2617-2640
0.008
0
7mer
3401-3416
0.005
1
6mer
4590-4612
0.003
0
6mer
3151-3175
0.001
0
6mer
3283-3297
0.001
1
KB-1183D5.13
hsa-miR-34c-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000416405
Biotype: lincRNA
Gene id: ENSG00000206142
Gene Name: KB-1183D5.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1268-1287
0.022
0
6mer
214-238
0.004
0
6mer
1485-1502
0.003
Not Conserved
AC138035.2
hsa-miR-34c-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499986
Biotype: lincRNA
Gene id: ENSG00000238035
Gene Name: AC138035.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5-31
0.016
1
6mer
342-364
0.013
1
TUG1
hsa-miR-34c-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000569384
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
359-376
0.028
7
AF131215.3
hsa-miR-34c-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000526648
Biotype: sense_intronic
Gene id: ENSG00000254936
Gene Name: AF131215.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1344-1362
0.015
1
6mer
1714-1718
0.007
0
7mer
453-470
0.006
1
PCAT14
hsa-miR-34c-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_109832.1
Biotype: lincRNA
Gene id: NR_109832.1 (gene)
Gene Name: PCAT14
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1097-1117
0.028
0
AC006116.15
hsa-miR-34c-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593258
Biotype: sense_intronic
Gene id: ENSG00000267429
Gene Name: AC006116.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
646-673
0.015
0
6mer
905-930
0.014
0
AC093323.3
hsa-miR-34c-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000307533
Biotype: lincRNA
Gene id: ENSG00000170846
Gene Name: AC093323.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
66-92
0.025
0
6mer
1342-1358
0.003
1
XLOC_009350
hsa-miR-34c-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019162
Biotype: transcript isomorph
Gene id: XLOC_009350
Gene Name: XLOC_009350
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1573-1595
0.016
0
7mer
1032-1057
0.010
1
6mer
1235-1259
0.002
0
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