LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-34c-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
AP000997.2
hsa-miR-34c-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564619
Biotype: lincRNA
Gene id: ENSG00000260254
Gene Name: AP000997.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
207-222
0.015
0
6mer
7518-7542
0.004
5
6mer
8049-8067
0.003
0
6mer
3745-3768
0.002
4
6mer
7073-7094
0.001
2
6mer
4864-4890
0.001
1
6mer
6085-6108
0.001
1
6mer
4618-4637
0.001
1
6mer
3810-3832
0.001
2
RP11-527N22.1
hsa-miR-34c-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000624599
Biotype: TEC
Gene id: ENSG00000253123
Gene Name: RP11-527N22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
374-398
0.013
1
7mer
2736-2756
0.010
10
6mer
3498-3520
0.003
1
6mer
3524-3551
0.002
0
6mer
1930-1956
0.001
0
6mer
1340-1362
0.001
0
XLOC_012889
hsa-miR-34c-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026570
Biotype: transcript isomorph
Gene id: XLOC_012889
Gene Name: XLOC_012889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2100-2124
0.025
3
6mer
2585-2611
0.002
0
6mer
813-836
0.002
1
LEPREL1-AS1
hsa-miR-34c-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000412203
Biotype: antisense
Gene id: ENSG00000225764
Gene Name: LEPREL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
112-130
0.020
1
6mer
597-613
0.005
Not Conserved
6mer
540-562
0.004
0
DLGAP1-AS1
hsa-miR-34c-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000317114
Biotype: antisense
Gene id: ENSG00000177337
Gene Name: DLGAP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
633-652
0.025
1
7mer
1246-1265
0.004
0
RP11-425A6.5
hsa-miR-34c-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609313
Biotype: antisense
Gene id: ENSG00000273312
Gene Name: RP11-425A6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1531-1554
0.024
1
6mer
1023-1045
0.003
1
6mer
1975-1994
0.003
1
MUC19
hsa-miR-34c-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
24278-24304
0.007
6
6mer
24012-24036
0.006
6
6mer
24453-24474
0.005
0
7mer
3172-3185
0.003
2
7mer
5402-5427
0.003
1
7mer
4560-4584
0.002
0
6mer
2542-2560
0.001
2
6mer
4465-4489
0.001
1
6mer
5955-5971
0.001
0
LINC01002
hsa-miR-34c-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000617662
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
330-356
0.009
1
6mer
139-155
0.009
1
6mer
266-289
0.007
1
6mer
107-134
0.005
0
RP11-728E14.2
hsa-miR-34c-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582990
Biotype: lincRNA
Gene id: ENSG00000264023
Gene Name: RP11-728E14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
208-230
0.014
1
6mer
161-182
0.011
1
6mer
151-174
0.004
0
XLOC_009016
hsa-miR-34c-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019181
Biotype: transcript isomorph
Gene id: XLOC_009016
Gene Name: XLOC_009016
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
244-254
0.019
1
6mer
472-497
0.010
1
RP11-219E7.2
hsa-miR-34c-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555481
Biotype: antisense
Gene id: ENSG00000258642
Gene Name: RP11-219E7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
181-206
0.022
1
7mer
282-298
0.007
0
RP11-600F24.7
hsa-miR-34c-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000568177
Biotype: antisense
Gene id: ENSG00000260285
Gene Name: RP11-600F24.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-341
0.009
0
7mer
3684-3709
0.008
1
6mer
795-817
0.004
1
6mer
3471-3491
0.002
1
6mer
2733-2757
0.001
1
6mer
1717-1740
0.001
1
6mer
1493-1511
0.001
2
6mer
2717-2729
0.001
2
6mer
2026-2044
0.001
Not Conserved
6mer
1343-1357
0.001
1
6mer
1662-1686
0.000
0
LINC01252
hsa-miR-34c-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499291
Biotype: lincRNA
Gene id: ENSG00000247157
Gene Name: LINC01252
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
120-146
0.029
0
LINC01002
hsa-miR-34c-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000622667
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
277-303
0.009
1
6mer
86-102
0.008
1
6mer
213-236
0.007
1
6mer
54-81
0.005
0
RP3-431P23.5
hsa-miR-34c-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000597278
Biotype: lincRNA
Gene id: ENSG00000269155
Gene Name: RP3-431P23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2184-2209
0.018
1
6mer
2253-2275
0.005
0
7mer
756-776
0.003
0
7mer
895-918
0.002
0
6mer
1295-1320
0.001
Not Conserved
RP11-381O7.3
hsa-miR-34c-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000601096
Biotype: lincRNA
Gene id: ENSG00000182021
Gene Name: RP11-381O7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
555-576
0.029
0
RP11-16C18.3
hsa-miR-34c-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000425588
Biotype: antisense
Gene id: ENSG00000237027
Gene Name: RP11-16C18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-206
0.018
2
7mer
14-31
0.011
2
LINC00964
hsa-miR-34c-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000510897
Biotype: lincRNA
Gene id: ENSG00000249816
Gene Name: LINC00964
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3464-3479
0.007
1
6mer
3424-3447
0.006
1
6mer
3301-3319
0.005
3
6mer
986-1007
0.005
5
6mer
674-693
0.004
3
6mer
1149-1167
0.002
2
LINC01002
hsa-miR-34c-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000614466
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-336
0.009
1
6mer
119-135
0.008
1
6mer
246-269
0.007
1
6mer
87-114
0.005
0
LINC00598
hsa-miR-34c-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000542632
Biotype: lincRNA
Gene id: ENSG00000215483
Gene Name: LINC00598
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1945-1955
0.012
4
8mer
1704-1720
0.008
1
6mer
1725-1741
0.006
3
6mer
1540-1561
0.002
2
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept