LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
AC010091.1
hsa-miR-34c-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000455420
Biotype: lincRNA
Gene id: ENSG00000233491
Gene Name: AC010091.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-44
0.027
3
6mer
2984-3007
0.003
2
C20orf203
hsa-miR-34c-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000360785
Biotype: lincRNA
Gene id: ENSG00000198547
Gene Name: C20orf203
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
464-485
0.010
1
6mer
9-18
0.007
4
6mer
5-18
0.004
2
6mer
578-597
0.004
1
6mer
129-141
0.004
2
XLOC_007290
hsa-miR-34c-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015925
Biotype: transcript isomorph
Gene id: XLOC_007290
Gene Name: XLOC_007290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1367-1387
0.022
1
6mer
982-1006
0.004
3
6mer
1002-1014
0.002
2
6mer
998-1010
0.001
0
RP11-796E2.4
hsa-miR-34c-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499685
Biotype: antisense
Gene id: ENSG00000245904
Gene Name: RP11-796E2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4087-4105
0.022
1
6mer
3172-3191
0.002
4
6mer
1249-1272
0.002
2
6mer
3899-3921
0.002
0
6mer
3353-3369
0.001
0
CTD-2554C21.3
hsa-miR-34c-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000443870
Biotype: lincRNA
Gene id: ENSG00000229481
Gene Name: CTD-2554C21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2338-2344
0.015
4
8mer
1659-1680
0.011
2
7mer
1275-1299
0.004
2
RP11-93B14.4
hsa-miR-34c-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000430184
Biotype: antisense
Gene id: ENSG00000223669
Gene Name: RP11-93B14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
587-600
0.025
Not Conserved
7mer
645-671
0.005
0
RP11-195F19.30
hsa-miR-34c-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000564224
Biotype: retained_intron
Gene id: ENSG00000261215
Gene Name: RP11-195F19.30
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
736-747
0.006
1
8mer
285-311
0.005
1
6mer
299-317
0.004
3
6mer
2681-2701
0.003
1
6mer
797-817
0.003
1
6mer
2541-2560
0.003
3
6mer
2129-2149
0.002
3
7mer
619-637
0.002
0
6mer
2300-2326
0.001
0
KCNMA1-AS1
hsa-miR-34c-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429850
Biotype: antisense
Gene id: ENSG00000236467
Gene Name: KCNMA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2681-2706
0.016
2
7mer
1017-1038
0.006
1
6mer
1761-1772
0.003
4
6mer
1184-1205
0.003
2
6mer
1913-1928
0.002
5
6mer
2000-2016
0.000
0
RP11-192H23.7
hsa-miR-34c-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577814
Biotype: antisense
Gene id: ENSG00000264044
Gene Name: RP11-192H23.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1097-1117
0.020
4
7mer
296-314
0.005
0
7mer
228-251
0.004
Not Conserved
XLOC_013824
hsa-miR-34c-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028456
Biotype: transcript isomorph
Gene id: XLOC_013824
Gene Name: XLOC_013824
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
93-113
0.012
1
6mer
286-311
0.005
1
6mer
442-469
0.005
1
6mer
766-786
0.004
0
6mer
472-487
0.003
0
THTPA
hsa-miR-34c-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557568
Biotype: retained_intron
Gene id: ENSG00000157306
Gene Name: THTPA
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
53-65
0.016
9
6mer
118-141
0.008
8
6mer
266-281
0.005
4
LINC00272
hsa-miR-34c-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000367563
Biotype: lincRNA
Gene id: ENSG00000203729
Gene Name: LINC00272
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-252
0.029
2
XLOC_002630
hsa-miR-34c-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006821
Biotype: transcript isomorph
Gene id: XLOC_002630
Gene Name: XLOC_002630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
271-291
0.016
0
6mer
78-105
0.004
1
6mer
594-620
0.003
1
7mer
667-687
0.003
0
6mer
228-248
0.003
1
RP11-461L18.1
hsa-miR-34c-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000561496
Biotype: lincRNA
Gene id: ENSG00000261382
Gene Name: RP11-461L18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1401-1421
0.026
1
6mer
200-216
0.003
1
RP11-573D15.8
hsa-miR-34c-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000596329
Biotype: antisense
Gene id: ENSG00000197099
Gene Name: RP11-573D15.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
39-61
0.018
9
6mer
413-439
0.004
0
6mer
162-184
0.002
0
6mer
614-636
0.002
0
6mer
188-215
0.002
0
CTD-2501M5.1
hsa-miR-34c-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519695
Biotype: lincRNA
Gene id: ENSG00000253507
Gene Name: CTD-2501M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
393-418
0.029
Not Conserved
RP11-328N19.1
hsa-miR-34c-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507639
Biotype: lincRNA
Gene id: ENSG00000251350
Gene Name: RP11-328N19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
142-155
0.007
1
6mer
116-141
0.006
1
6mer
60-83
0.005
0
6mer
88-112
0.004
0
6mer
27-40
0.004
0
6mer
45-69
0.003
Not Conserved
CTD-2501M5.1
hsa-miR-34c-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524275
Biotype: lincRNA
Gene id: ENSG00000253507
Gene Name: CTD-2501M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
393-418
0.029
Not Conserved
TTTY15
hsa-miR-34c-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000457658
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
273-294
0.029
0
XLOC_007489
hsa-miR-34c-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016098
Biotype: transcript isomorph
Gene id: XLOC_007489
Gene Name: XLOC_007489
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
190-207
0.029
4
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