LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
LINC01002
hsa-miR-34c-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587051
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1417-1443
0.005
1
6mer
1226-1242
0.004
1
6mer
1353-1376
0.003
1
6mer
903-925
0.003
0
6mer
412-438
0.003
0
6mer
541-564
0.003
0
6mer
408-429
0.003
0
6mer
309-328
0.003
0
6mer
1194-1221
0.002
0
6mer
648-670
0.001
0
6mer
692-707
0.001
Not Conserved
KCNA3
hsa-miR-34c-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566942
Biotype: lincRNA
Gene id: ENSG00000259834
Gene Name: KCNA3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1201-1227
0.020
4
7mer
745-769
0.011
3
RP11-385F5.5
hsa-miR-34c-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608547
Biotype: antisense
Gene id: ENSG00000273058
Gene Name: RP11-385F5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-281
0.014
1
7mer
310-328
0.009
1
6mer
187-203
0.005
1
6mer
163-186
0.004
1
AC108448.3
hsa-miR-34c-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000455154
Biotype: antisense
Gene id: ENSG00000234791
Gene Name: AC108448.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
17-43
0.027
2
6mer
171-194
0.004
Not Conserved
LHFPL3-AS1
hsa-miR-34c-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000417290
Biotype: antisense
Gene id: ENSG00000226869
Gene Name: LHFPL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-275
0.016
1
6mer
52-67
0.010
6
6mer
108-124
0.005
1
LINC01001
hsa-miR-34c-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_028326.1
Biotype: lincRNA
Gene id: NR_028326.1 (gene)
Gene Name: LINC01001
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4253-4279
0.004
0
6mer
328-345
0.003
0
6mer
4189-4212
0.003
0
6mer
296-313
0.002
0
7mer
3674-3701
0.001
Not Conserved
6mer
3837-3863
0.001
Not Conserved
6mer
435-453
0.001
Not Conserved
6mer
4030-4057
0.001
Not Conserved
6mer
4062-4078
0.001
Not Conserved
6mer
2559-2581
0.001
Not Conserved
6mer
570-589
0.001
Not Conserved
6mer
3288-3313
0.001
Not Conserved
6mer
3516-3543
0.001
Not Conserved
6mer
2785-2801
0.001
0
6mer
3189-3205
0.001
Not Conserved
6mer
1431-1450
0.001
Not Conserved
6mer
2348-2363
0.001
Not Conserved
6mer
2197-2220
0.001
Not Conserved
6mer
2854-2870
0.001
0
6mer
3611-3627
0.001
Not Conserved
6mer
2068-2094
0.001
Not Conserved
6mer
3579-3606
0.001
Not Conserved
6mer
3034-3057
0.000
Not Conserved
6mer
2999-3018
0.000
0
6mer
1965-1984
0.000
Not Conserved
6mer
3284-3304
0.000
Not Conserved
6mer
2886-2904
0.000
Not Conserved
6mer
3098-3124
0.000
Not Conserved
6mer
2064-2085
0.000
Not Conserved
6mer
2304-2326
0.000
Not Conserved
RP11-731J8.2
hsa-miR-34c-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562284
Biotype: sense_overlapping
Gene id: ENSG00000260918
Gene Name: RP11-731J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4577-4593
0.011
Not Conserved
6mer
308-326
0.007
4
7mer
535-553
0.006
1
8mer
1201-1227
0.005
0
6mer
3789-3809
0.002
1
6mer
3045-3062
0.001
2
RP11-10L7.1
hsa-miR-34c-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500009
Biotype: lincRNA
Gene id: ENSG00000246375
Gene Name: RP11-10L7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-70
0.031
1
AC010091.1
hsa-miR-34c-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000413944
Biotype: lincRNA
Gene id: ENSG00000233491
Gene Name: AC010091.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-43
0.028
3
6mer
2983-3006
0.002
2
RP11-394J1.2
hsa-miR-34c-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551844
Biotype: antisense
Gene id: ENSG00000258177
Gene Name: RP11-394J1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
142-166
0.019
14
7mer
442-462
0.012
0
RP11-334E6.3
hsa-miR-34c-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530918
Biotype: antisense
Gene id: ENSG00000254740
Gene Name: RP11-334E6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
137-159
0.015
7
8mer
439-466
0.013
3
6mer
752-768
0.003
1
XLOC_007387
hsa-miR-34c-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015553
Biotype: transcript isomorph
Gene id: XLOC_007387
Gene Name: XLOC_007387
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-35
0.015
0
7mer
533-557
0.013
0
6mer
1443-1461
0.003
Not Conserved
CTD-2501M5.1
hsa-miR-34c-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519005
Biotype: lincRNA
Gene id: ENSG00000253507
Gene Name: CTD-2501M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-372
0.031
Not Conserved
RP11-701P16.5
hsa-miR-34c-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_037867.1
Biotype: lincRNA
Gene id: NR_037867.1 (gene)
Gene Name: RP11-701P16.5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3191-3217
0.019
0
6mer
636-658
0.004
2
7mer
3149-3174
0.003
Not Conserved
6mer
3143-3158
0.002
0
6mer
1842-1858
0.001
0
6mer
1288-1314
0.001
Not Conserved
6mer
1811-1829
0.001
0
RP11-744I24.3
hsa-miR-34c-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000565449
Biotype: lincRNA
Gene id: ENSG00000261797
Gene Name: RP11-744I24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-52
0.030
0
C21orf67
hsa-miR-34c-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_027128.1
Biotype: lincRNA
Gene id: NR_027128.1 (gene)
Gene Name: C21orf67
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-88
0.013
0
6mer
111-138
0.004
0
7mer
1240-1260
0.003
0
6mer
948-974
0.002
1
6mer
328-354
0.002
0
6mer
606-620
0.002
0
6mer
1334-1349
0.002
0
6mer
459-481
0.001
0
6mer
1092-1108
0.001
0
6mer
1096-1108
0.001
Not Conserved
RP11-432J24.3
hsa-miR-34c-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000450206
Biotype: antisense
Gene id: ENSG00000234311
Gene Name: RP11-432J24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-110
0.018
1
7mer
786-799
0.007
1
7mer
68-93
0.006
0
XLOC_008538
hsa-miR-34c-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018256
Biotype: transcript isomorph
Gene id: XLOC_008538
Gene Name: XLOC_008538
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
711-725
0.020
1
6mer
1263-1289
0.006
0
6mer
601-623
0.004
0
SDCBP2-AS1
hsa-miR-34c-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000446423
Biotype: antisense
Gene id: ENSG00000234684
Gene Name: SDCBP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1224-1246
0.025
1
7mer
553-578
0.003
0
6mer
974-998
0.002
0
XLOC_013174
hsa-miR-34c-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027635
Biotype: transcript isomorph
Gene id: XLOC_013174
Gene Name: XLOC_013174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
38-58
0.017
0
6mer
1496-1523
0.013
0
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