LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
XLOC_011456
hsa-miR-34c-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023655
Biotype: transcript isomorph
Gene id: XLOC_011456
Gene Name: XLOC_011456
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
823-850
0.031
0
AP000230.1
hsa-miR-34c-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000608591
Biotype: lincRNA
Gene id: ENSG00000273492
Gene Name: AP000230.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1642-1668
0.027
Not Conserved
6mer
1416-1437
0.005
1
AP001065.15
hsa-miR-34c-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000449713
Biotype: lincRNA
Gene id: ENSG00000228709
Gene Name: AP001065.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
727-752
0.008
0
7mer
440-459
0.007
0
6mer
373-389
0.006
0
6mer
604-622
0.006
0
6mer
458-478
0.004
0
RP11-470L19.2
hsa-miR-34c-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457402
Biotype: lincRNA
Gene id: ENSG00000235407
Gene Name: RP11-470L19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
938-948
0.008
10
8mer
347-358
0.006
0
6mer
106-131
0.005
1
6mer
442-466
0.004
2
6mer
251-267
0.003
0
6mer
494-520
0.003
1
6mer
581-596
0.002
2
XLOC_010109
hsa-miR-34c-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020821
Biotype: transcript isomorph
Gene id: XLOC_010109
Gene Name: XLOC_010109
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5156-5177
0.015
1
6mer
5026-5047
0.009
5
6mer
4225-4245
0.004
3
6mer
918-934
0.002
1
6mer
3514-3540
0.001
Not Conserved
CTD-2006C1.2
hsa-miR-34c-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592187
Biotype: retained_intron
Gene id: ENSG00000219665
Gene Name: CTD-2006C1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
12-33
0.012
1
7mer
1048-1066
0.006
0
6mer
2816-2841
0.005
0
6mer
3597-3624
0.004
0
6mer
2528-2548
0.002
0
7mer
3142-3162
0.002
Not Conserved
RP11-267L5.1
hsa-miR-34c-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000507929
Biotype: lincRNA
Gene id: ENSG00000254339
Gene Name: RP11-267L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
446-471
0.031
Not Conserved
C1orf132
hsa-miR-34c-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10542-10558
0.007
1
8mer
4455-4482
0.005
2
6mer
14418-14444
0.005
5
6mer
13757-13779
0.003
5
7mer
9393-9414
0.002
1
6mer
5977-5996
0.002
4
6mer
3431-3456
0.001
1
6mer
12029-12049
0.001
1
6mer
4725-4745
0.001
0
6mer
10992-11007
0.001
0
6mer
6956-6979
0.001
0
6mer
5670-5687
0.001
1
6mer
4065-4091
0.001
1
6mer
4701-4716
0.000
Not Conserved
XLOC_001317
hsa-miR-34c-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003544
Biotype: transcript isomorph
Gene id: XLOC_001317
Gene Name: XLOC_001317
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
374-387
0.024
1
6mer
1048-1071
0.004
0
6mer
1312-1334
0.003
1
RP11-154H23.3
hsa-miR-34c-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000604491
Biotype: lincRNA
Gene id: ENSG00000270562
Gene Name: RP11-154H23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2339-2359
0.015
0
7mer
1432-1457
0.013
3
6mer
1581-1597
0.003
3
RP11-381O7.3
hsa-miR-34c-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000426350
Biotype: lincRNA
Gene id: ENSG00000182021
Gene Name: RP11-381O7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1995-2012
0.015
1
7mer
1504-1528
0.012
0
6mer
600-618
0.003
Not Conserved
AF003625.3
hsa-miR-34c-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602313
Biotype: lincRNA
Gene id: ENSG00000269993
Gene Name: AF003625.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
390-415
0.031
7
C9orf106
hsa-miR-34c-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000316786
Biotype: lincRNA
Gene id: ENSG00000179082
Gene Name: C9orf106
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
568-590
0.017
2
6mer
160-175
0.003
3
7mer
2345-2361
0.003
1
7mer
777-797
0.003
0
6mer
685-694
0.002
2
6mer
2332-2348
0.002
Not Conserved
6mer
882-902
0.001
1
RP4-671O14.7
hsa-miR-34c-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
18946-18968
0.007
0
6mer
18741-18763
0.006
0
7mer
2258-2275
0.004
1
8mer
7592-7608
0.004
0
7mer
9425-9451
0.002
0
6mer
4103-4116
0.002
1
6mer
7986-8004
0.001
0
6mer
7178-7202
0.001
1
6mer
10481-10501
0.001
1
6mer
8895-8910
0.001
Not Conserved
6mer
6610-6633
0.001
Not Conserved
7mer
9254-9271
0.001
Not Conserved
RP11-119D9.1
hsa-miR-34c-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000511677
Biotype: lincRNA
Gene id: ENSG00000251637
Gene Name: RP11-119D9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3284-3306
0.023
5
6mer
311-334
0.003
Not Conserved
6mer
227-242
0.002
Not Conserved
6mer
2417-2431
0.002
1
6mer
2391-2405
0.001
Not Conserved
6mer
1697-1715
0.001
Not Conserved
XLOC_006752
hsa-miR-34c-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015260
Biotype: transcript isomorph
Gene id: XLOC_006752
Gene Name: XLOC_006752
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-222
0.031
6
XLOC_008828
hsa-miR-34c-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018521
Biotype: transcript isomorph
Gene id: XLOC_008828
Gene Name: XLOC_008828
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
107-125
0.031
1
CTD-2650P22.2
hsa-miR-34c-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000612566
Biotype: sense_intronic
Gene id: ENSG00000274528
Gene Name: CTD-2650P22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-134
0.024
0
8mer
676-692
0.007
0
XLOC_012578
hsa-miR-34c-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025770
Biotype: transcript isomorph
Gene id: XLOC_012578
Gene Name: XLOC_012578
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-137
0.031
3
RP11-308N19.1
hsa-miR-34c-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000425709
Biotype: lincRNA
Gene id: ENSG00000234323
Gene Name: RP11-308N19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-115
0.031
4
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