LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
AF131215.4
hsa-miR-34c-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000531549
Biotype: sense_intronic
Gene id: ENSG00000254556
Gene Name: AF131215.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-331
0.032
1
LOC100133331
hsa-miR-34c-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028327.1
Biotype: lincRNA
Gene id: NR_028327.1 (gene)
Gene Name: LOC100133331
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3912-3938
0.005
0
6mer
3848-3871
0.003
0
6mer
435-453
0.003
0
6mer
328-345
0.002
Not Conserved
6mer
3689-3716
0.002
Not Conserved
6mer
3496-3522
0.001
Not Conserved
6mer
3721-3737
0.001
Not Conserved
6mer
2218-2240
0.001
Not Conserved
6mer
570-589
0.001
Not Conserved
6mer
3333-3360
0.001
Not Conserved
6mer
296-313
0.001
Not Conserved
6mer
2947-2972
0.001
Not Conserved
6mer
3175-3202
0.001
Not Conserved
6mer
2444-2460
0.001
0
6mer
1431-1450
0.001
Not Conserved
6mer
2848-2864
0.001
Not Conserved
6mer
2513-2529
0.001
0
6mer
3270-3286
0.001
Not Conserved
6mer
1963-1985
0.001
Not Conserved
6mer
1856-1879
0.001
Not Conserved
6mer
3238-3265
0.001
Not Conserved
6mer
2658-2677
0.001
0
6mer
1727-1753
0.001
Not Conserved
6mer
1624-1643
0.000
Not Conserved
6mer
2693-2716
0.000
Not Conserved
6mer
2757-2783
0.000
Not Conserved
6mer
2943-2963
0.000
Not Conserved
6mer
2545-2563
0.000
Not Conserved
6mer
1723-1744
0.000
Not Conserved
XLOC_009818
hsa-miR-34c-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020191
Biotype: transcript isomorph
Gene id: XLOC_009818
Gene Name: XLOC_009818
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
353-368
0.032
1
RP11-46C24.3
hsa-miR-34c-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000378340
Biotype: lincRNA
Gene id: ENSG00000205015
Gene Name: RP11-46C24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1148-1161
0.014
1
9mer
460-480
0.010
1
6mer
670-694
0.004
1
6mer
864-880
0.002
0
6mer
376-397
0.002
0
RP11-255H23.4
hsa-miR-34c-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599944
Biotype: lincRNA
Gene id: ENSG00000267924
Gene Name: RP11-255H23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2215-2232
0.016
0
7mer
166-186
0.012
0
6mer
674-700
0.004
0
LINC00384
hsa-miR-34c-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437721
Biotype: lincRNA
Gene id: ENSG00000232117
Gene Name: LINC00384
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6202-6223
0.023
1
6mer
5972-5984
0.002
0
6mer
5567-5592
0.002
0
7mer
2245-2272
0.002
2
6mer
1575-1601
0.001
1
6mer
2389-2410
0.001
1
6mer
1465-1490
0.000
0
XLOC_001741
hsa-miR-34c-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003929
Biotype: transcript isomorph
Gene id: XLOC_001741
Gene Name: XLOC_001741
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-101
0.032
1
CTA-796E4.5
hsa-miR-34c-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
439-456
0.005
2
8mer
9263-9280
0.004
2
6mer
731-758
0.004
3
7mer
23701-23714
0.003
1
8mer
3516-3530
0.002
0
6mer
10226-10240
0.002
1
6mer
8681-8696
0.002
1
6mer
12657-12673
0.002
2
6mer
30099-30118
0.001
1
6mer
6582-6609
0.001
0
6mer
17751-17767
0.001
0
6mer
18163-18180
0.001
Not Conserved
6mer
2553-2571
0.001
1
6mer
11256-11280
0.001
0
6mer
8781-8800
0.001
1
6mer
8931-8954
0.000
0
XLOC_000535
hsa-miR-34c-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001250
Biotype: transcript isomorph
Gene id: XLOC_000535
Gene Name: XLOC_000535
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
735-748
0.032
1
RP11-397C12.1
hsa-miR-34c-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424138
Biotype: antisense
Gene id: ENSG00000227466
Gene Name: RP11-397C12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
155-166
0.032
1
AC008079.10
hsa-miR-34c-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4433-4455
0.005
1
6mer
236-259
0.003
0
6mer
2359-2381
0.002
4
6mer
2831-2852
0.002
0
6mer
8538-8556
0.002
3
6mer
5599-5623
0.002
4
6mer
15506-15527
0.002
1
6mer
13821-13845
0.001
1
6mer
4821-4848
0.001
1
6mer
11451-11470
0.001
1
6mer
8254-8274
0.001
1
6mer
18759-18782
0.001
1
6mer
13365-13381
0.001
1
6mer
7695-7721
0.001
0
6mer
6921-6943
0.001
1
6mer
6294-6309
0.001
1
6mer
10811-10831
0.001
3
7mer
4345-4367
0.001
0
6mer
12256-12276
0.001
0
6mer
17205-17224
0.001
Not Conserved
RP3-470B24.5
hsa-miR-34c-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000441716
Biotype: lincRNA
Gene id: ENSG00000235994
Gene Name: RP3-470B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-84
0.016
0
8mer
12-35
0.012
1
6mer
99-122
0.004
1
XLOC_005569
hsa-miR-34c-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012035
Biotype: transcript isomorph
Gene id: XLOC_005569
Gene Name: XLOC_005569
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
618-640
0.032
Not Conserved
XLOC_009734
hsa-miR-34c-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020407
Biotype: transcript isomorph
Gene id: XLOC_009734
Gene Name: XLOC_009734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-225
0.028
0
6mer
1969-1988
0.003
1
CTC-559E9.6
hsa-miR-34c-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589657
Biotype: antisense
Gene id: ENSG00000267419
Gene Name: CTC-559E9.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
637-659
0.017
1
6mer
224-241
0.015
1
LINC00664
hsa-miR-34c-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596718
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2528-2540
0.007
1
7mer
512-537
0.005
Not Conserved
6mer
229-256
0.005
0
6mer
2622-2638
0.003
0
6mer
1864-1888
0.003
1
6mer
1645-1671
0.003
1
6mer
1279-1297
0.002
0
6mer
472-498
0.001
Not Conserved
6mer
668-685
0.001
Not Conserved
7mer
1342-1368
0.001
0
6mer
1413-1437
0.001
0
AC024560.2
hsa-miR-34c-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424493
Biotype: lincRNA
Gene id: ENSG00000236833
Gene Name: AC024560.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
903-924
0.023
0
6mer
853-873
0.007
0
6mer
262-284
0.002
Not Conserved
DLGAP1-AS1
hsa-miR-34c-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_024101.1
Biotype: antisense
Gene id: NR_024101.1 (gene)
Gene Name: DLGAP1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
633-652
0.032
1
LINC00528
hsa-miR-34c-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000600723
Biotype: lincRNA
Gene id: ENSG00000269220
Gene Name: LINC00528
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
545-570
0.029
1
7mer
1494-1518
0.002
Not Conserved
WT1-AS
hsa-miR-34c-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525436
Biotype: antisense
Gene id: ENSG00000183242
Gene Name: WT1-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
583-605
0.019
2
6mer
997-1018
0.009
7
6mer
1159-1186
0.003
0
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