LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-34c-5p


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Gene
miRNA
Score
DIANA Links
LINC01272
hsa-miR-34c-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000422459
Biotype: lincRNA
Gene id: ENSG00000224397
Gene Name: LINC01272
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
800-818
0.009
1
7mer
244-259
0.008
2
8mer
539-558
0.008
1
6mer
234-251
0.006
3
6mer
572-591
0.002
2
RP11-661A12.7
hsa-miR-34c-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000529247
Biotype: antisense
Gene id: ENSG00000254741
Gene Name: RP11-661A12.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
381-397
0.027
3
6mer
319-339
0.005
6
XLOC_005165
hsa-miR-34c-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011690
Biotype: transcript isomorph
Gene id: XLOC_005165
Gene Name: XLOC_005165
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
459-478
0.029
Not Conserved
6mer
559-582
0.004
Not Conserved
CTD-3060P21.1
hsa-miR-34c-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574885
Biotype: antisense
Gene id: ENSG00000262884
Gene Name: CTD-3060P21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-199
0.015
2
7mer
1890-1908
0.008
1
6mer
2333-2348
0.004
3
6mer
529-551
0.002
3
6mer
794-810
0.002
2
6mer
1382-1408
0.001
1
LINC00559
hsa-miR-34c-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_047489.1
Biotype: lincRNA
Gene id: NR_047489.1 (gene)
Gene Name: LINC00559
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3610-3634
0.027
Not Conserved
7mer
1599-1617
0.003
0
6mer
3316-3336
0.001
Not Conserved
6mer
1503-1525
0.000
0
RP11-628E19.2
hsa-miR-34c-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522918
Biotype: antisense
Gene id: ENSG00000254357
Gene Name: RP11-628E19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-438
0.028
2
6mer
454-468
0.005
1
XLOC_006468
hsa-miR-34c-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012911
Biotype: transcript isomorph
Gene id: XLOC_006468
Gene Name: XLOC_006468
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3101-3119
0.007
1
6mer
3177-3201
0.007
1
6mer
2609-2631
0.005
1
6mer
2802-2828
0.004
0
6mer
411-430
0.004
0
6mer
3090-3116
0.003
0
6mer
2573-2599
0.001
0
6mer
2437-2460
0.001
0
LINC01272
hsa-miR-34c-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000622604
Biotype: lincRNA
Gene id: ENSG00000224397
Gene Name: LINC01272
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-251
0.009
2
8mer
531-550
0.007
1
7mer
792-810
0.006
1
6mer
226-243
0.006
3
6mer
1059-1074
0.002
2
6mer
564-583
0.002
2
6mer
1059-1078
0.001
2
RP11-439E19.9
hsa-miR-34c-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000570141
Biotype: lincRNA
Gene id: ENSG00000260698
Gene Name: RP11-439E19.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2867-2883
0.009
1
7mer
1628-1652
0.004
1
6mer
2673-2685
0.004
1
6mer
2916-2930
0.004
0
6mer
516-534
0.003
0
6mer
1205-1214
0.003
0
7mer
1853-1879
0.003
1
6mer
2012-2033
0.003
3
LINC00559
hsa-miR-34c-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000569476
Biotype: lincRNA
Gene id: ENSG00000261446
Gene Name: LINC00559
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3610-3634
0.027
Not Conserved
7mer
1599-1617
0.004
0
6mer
3316-3336
0.001
Not Conserved
6mer
1503-1525
0.000
0
AP001476.2
hsa-miR-34c-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000451618
Biotype: lincRNA
Gene id: ENSG00000224413
Gene Name: AP001476.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
651-668
0.017
1
6mer
1947-1969
0.007
1
6mer
1764-1777
0.005
1
6mer
1238-1257
0.004
1
XLOC_012558
hsa-miR-34c-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025741
Biotype: transcript isomorph
Gene id: XLOC_012558
Gene Name: XLOC_012558
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-307
0.012
Not Conserved
7mer
390-414
0.006
Not Conserved
6mer
517-539
0.005
0
6mer
948-970
0.005
1
6mer
974-1000
0.003
1
6mer
219-242
0.002
Not Conserved
UBE2Q1-AS1
hsa-miR-34c-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441613
Biotype: antisense
Gene id: ENSG00000229780
Gene Name: UBE2Q1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
392-405
0.029
1
6mer
283-307
0.003
0
RP3-448I9.1
hsa-miR-34c-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434947
Biotype: lincRNA
Gene id: ENSG00000234540
Gene Name: RP3-448I9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-115
0.027
1
6mer
327-349
0.006
1
RP11-279F6.1
hsa-miR-34c-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559029
Biotype: lincRNA
Gene id: ENSG00000245750
Gene Name: RP11-279F6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-138
0.032
1
XLOC_010267
hsa-miR-34c-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020228
Biotype: transcript isomorph
Gene id: XLOC_010267
Gene Name: XLOC_010267
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
756-778
0.010
1
6mer
1181-1203
0.007
1
7mer
466-486
0.005
0
6mer
898-924
0.004
0
6mer
267-293
0.004
0
6mer
165-190
0.002
Not Conserved
6mer
523-539
0.001
Not Conserved
XLOC_008975
hsa-miR-34c-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018622
Biotype: transcript isomorph
Gene id: XLOC_008975
Gene Name: XLOC_008975
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
395-414
0.020
0
7mer
192-210
0.012
0
RP11-528N21.1
hsa-miR-34c-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000456335
Biotype: lincRNA
Gene id: ENSG00000226302
Gene Name: RP11-528N21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-134
0.026
2
6mer
511-533
0.007
1
C21orf90
hsa-miR-34c-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000354333
Biotype: antisense
Gene id: ENSG00000182912
Gene Name: C21orf90
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-306
0.015
1
6mer
1856-1879
0.005
1
7mer
1872-1897
0.004
0
6mer
715-735
0.004
1
6mer
846-872
0.002
0
6mer
1696-1712
0.002
0
LINC01490
hsa-miR-34c-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551399
Biotype: lincRNA
Gene id: ENSG00000257741
Gene Name: LINC01490
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-34c-5p
Sequence: aggcaguguaguuagcugauugc
MirBase ID: MIMAT0000686
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
266-281
0.032
1
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